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Name : Shal_4172 (Shal_4172) Accession : YP_001676371.1 Strain : Shewanella halifaxensis HAW-EB4 Genome accession: NC_010334 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 5070730 - 5071953 bp Length : 1224 bp Strand : - Note : TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: slo:Shew_3617 general secretion pathway protein F DNA sequence : ATGCCCGCATTTGAATACAAAGCATTAGACAAGACGGGTAAGCAGCAAAAGGGCGTGGTCGAGGCCGACACCGCCAGACA TGCCCGCACCCAGTTAAGAGAACAACGCTTGATGCCGCTGGAGATTACTCCTGTGGTTGAGAAAGAGAGTAAGGCAAAAT CTGCCGGCTTTAGTTTTCTAAAACGCGGCATCTCTACCGCCGAGCTTGCGCTGATCACCCGCCAAATTGCGACCTTAGTG GCAGCGGGTCTACCCATTGAAGAAGCATTAAAGGCCGTTGGTCAACAGTGTGAGAAAGACCGTTTAGCCAGTATGGTGAT GGCGGTGCGTTCACGCGTGGTTGAAGGTTATAGTCTGGCCGATTCCATGGCTGAGTTTCCGCATATTTTCGATGAGTTAT ATCGTGCTATGGTGGCGTCTGGCGAAAAGTCGGGCCACTTAGAAGTGGTGCTCAATCGTCTTGCCGATTACACCGAACGT CGCCAGCAGCTCAAGAGTAAAATGACCCAGGCGATGATCTATCCCATCGTGCTGACAGTGGTCGCCATAGGTGTTATTGC TATCTTGCTTGCTGCGGTTGTGCCGCAAGTTGTTGGTCAGTTCGAGCATATGGGGCAGGAGCTTCCTTGGACGACCGAGT TATTGATCGCATCATCTGACTTTATCCGCGATTATGGGCTTATTGTATTAGTCGCCATTGTCGGCCTGTTCTTTATTGCT AAACGTTTATTAGTCACCCCTAAAAATCGCATGATATACGACAGCATGTTGCTGCGCTTACCTGTGATCAGCAAGGTGAG TAAAAGCCTTAATACAGCGCGTTTTGCCCGTACATTGAGTATTTTGACTGCCAGTTCAGTCCCTCTACTCGATGCGATGC GCATCGCCAGCGATGTACTGGTTAACGTCAAAGTGAAAGCGGCTGTTGAAGACGCAACATTGCGGGTACGAGAAGGCACG AGTTTGGGCACTGCACTAGCCAACACTAAACTTTTTCCGCCTATGATGCTCTATATGATTACCTCTGGTGAAAAAAGTGG TCAGCTTGAGCAGATGCTTGAGCGCGCCGCCGATAACCAAGACCGAGAGTTTGAGTCTAACGTGACGATAGCTTTAGGGG TGTTTGAACCTATGTTAGTTGTTAGCATGGCGGCAGTGGTTCTGTTTATTGTTCTTGCTATTTTGCAGCCAATTTTGGCG CTGAATAATATGATTAGTGGTTAA Protein sequence : MPAFEYKALDKTGKQQKGVVEADTARHARTQLREQRLMPLEITPVVEKESKAKSAGFSFLKRGISTAELALITRQIATLV AAGLPIEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAEFPHIFDELYRAMVASGEKSGHLEVVLNRLADYTER RQQLKSKMTQAMIYPIVLTVVAIGVIAILLAAVVPQVVGQFEHMGQELPWTTELLIASSDFIRDYGLIVLVAIVGLFFIA KRLLVTPKNRMIYDSMLLRLPVISKVSKSLNTARFARTLSILTASSVPLLDAMRIASDVLVNVKVKAAVEDATLRVREGT SLGTALANTKLFPPMMLYMITSGEKSGQLEQMLERAADNQDREFESNVTIALGVFEPMLVVSMAAVVLFIVLAILQPILA LNNMISG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 3e-87 | 55 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-87 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Shal_4172 | YP_001676371.1 | general secretion pathway protein F | VFG2049 | Protein | 7e-85 | 55 |
| Shal_4172 | YP_001676371.1 | general secretion pathway protein F | VFG0181 | Protein | 1e-83 | 49 |
| Shal_4172 | YP_001676371.1 | general secretion pathway protein F | VFG1870 | Protein | 6e-80 | 45 |
