Gene Information

Name : Shal_4171 (Shal_4171)
Accession : YP_001676370.1
Strain : Shewanella halifaxensis HAW-EB4
Genome accession: NC_010334
Putative virulence/resistance : Virulence
Product : general secretion pathway protein G
Function : -
COG functional category : N : Cell motility
COG ID : COG2165
EC number : -
Position : 5070229 - 5070663 bp
Length : 435 bp
Strand : -
Note : TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: slo:Shew_3616 general secretion pathway protein G

DNA sequence : 
ATGCAAACACGTAATAAACAACAAGGTTTTACTCTTTTAGAAGTCATGGTGGTCATCGTTATTTTAGGTATTTTAGCCTC
TATGGTTGTACCTAACTTGATGGGTAACAAAGATAAAGCCGACCAACAAAAAGCGGTTTCAGATATTGTTGCATTAGAAA
ATGCCTTGGACATGTATAAGTTGGATAACAGTGTTTACCCAACAACAGAGCAAGGTCTAGAAGCACTAGTGCAAAAGCCA
ACTATCTCTCCTGAGCCACGTAACTATCGTGCCGATGGTTATGTTAAGCGTTTGCCGCAAGATCCATGGCGTAGTGACTA
TCTGCTATTGAGCCCTGGTGAAAACGGTAAGTTAGATATCTTCAGTGCGGGCCCAGATGGCCAGCCAGGTACAGAAGATG
ATATCGGTAACTGGAACCTACAGAACTTCCAATAA

Protein sequence : 
MQTRNKQQGFTLLEVMVVIVILGILASMVVPNLMGNKDKADQQKAVSDIVALENALDMYKLDNSVYPTTEQGLEALVQKP
TISPEPRNYRADGYVKRLPQDPWRSDYLLLSPGENGKLDIFSAGPDGQPGTEDDIGNWNLQNFQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspG YP_854404.1 type II secretion protein GspG Not tested PAI I APEC-O1 Protein 4e-45 68
gspG CAE85231.1 GspG, hypothetical type II secretion protein Not tested PAI V 536 Protein 3e-45 68

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shal_4171 YP_001676370.1 general secretion pathway protein G VFG2050 Protein 1e-45 68
Shal_4171 YP_001676370.1 general secretion pathway protein G VFG1871 Protein 3e-34 56
Shal_4171 YP_001676370.1 general secretion pathway protein G VFG0180 Protein 1e-33 56