|
Name : rph (Shal_0422) Accession : YP_001672656.1 Strain : Shewanella halifaxensis HAW-EB4 Genome accession: NC_010334 Putative virulence/resistance : Unknown Product : ribonuclease PH Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0689 EC number : 2.7.7.56 Position : 497250 - 497963 bp Length : 714 bp Strand : + Note : RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs DNA sequence : ATGCGCCCAAGCAACAGAACTCCAGCACAGTCTCGCCCTGTGACTATTACTCGCCAGTTTACTGCTCATGCCGAAGGTTC GGTTTTAGTAGAATTTGGTGACACCAAAGTACTGTGTACAGCTAGTTTTGAAGAAGGCGTACCGCGTTTCCTTAAAGGCC AAGGCCAAGGTTGGGTAACTGCTGAATATGGTATGTTGCCACGTTCAACGCATAGCCGTATGCAGCGTGAAGCTGCTCGC GGTAAGCAGTCTGGTCGTACTCAAGAAATTCAACGTCTAATTGGCCGCTCACTACGTGCTGCGGTAGACATGAAGCTTCT AGGCGAAAACACCATTGTTATCGACTGTGATGTGATTCAGGCTGACGGTGGTACACGTACCGCTGCTATCACTGGTGCAT GTGTTGCGCTCGTTGACGCGCTTAACTGGGCTCGTGGTAAAGGCATCTTGAAGACTAACCCACTTAAGTTCCTTATTGCT GCGGTAAGTGTTGGTATCTATAAGGGCGAGCCAATCTGCGATTTAGAATATATCGAAGACAGCGCTGCTGAAACTGACAT GAACGTGGTAATGACTGAGACCGGTAAGATTATCGAGATCCAGGGTACTGCAGAAGGTGAGCCGTTCAGCCACGAAGAGC TATTGAGCCTTCTAGAATTGGCTAAGCACGGTATTCGCGAGATCGTTGATATCCAGAAAGCTTCGTTAAGCTAA Protein sequence : MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVTAEYGMLPRSTHSRMQREAAR GKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQADGGTRTAAITGACVALVDALNWARGKGILKTNPLKFLIA AVSVGIYKGEPICDLEYIEDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDIQKASLS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| rph | YP_001800860.1 | ribonuclease PH | Not tested | Not named | Protein | 5e-60 | 58 |
