Gene Information

Name : Shal_4009 (Shal_4009)
Accession : YP_001676208.1
Strain : Shewanella halifaxensis HAW-EB4
Genome accession: NC_010334
Putative virulence/resistance : Virulence
Product : 4Fe-4S ferredoxin
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG0437
EC number : -
Position : 4884919 - 4885614 bp
Length : 696 bp
Strand : -
Note : PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_0244 4Fe-4S ferredoxin, iron-sulfur binding domain protein

DNA sequence : 
ATGTTGGATAGACGCTCCATATTAAAAATGGCTGCTGGTGGTGCAATGTTAACCCTCATCCCTAGTGCTCAACTTCAAGC
TAAGACACCTGATAAACGATTGGCCATGGTGTTTGATGTTCGCCGTTGCACAGGCTGTCTATCTTGCACTGTGTCTTGTG
CGATGGAAAATCAGACCGATGCGGGCCGCTGTCGAACTCGGGTTAATCAGGCTGCGATTGAAACTGAATTGGGGTTGGCC
ACACTCGCAGTTCCTAATCAATGTAATCAATGTGATAACCCCGCTTGCGTCTATGTTTGCCCAGTCGAAGCGACCTATAA
GCGTAAAGAAGATGGCATCGTCGTGATCAATCATGATGAATGCATTCACTGCCAGTTGTGTGTCGATGCCTGCCCTTATG
GTGCACGCCGTAAAGATGAAACTCTTAACTCTCCACCTGAGAAATGTAACTTCTGTATTCATCGTGTATCGGTAGGCTTG
CTACCAGCTTGTGTGGAAACTTGTATTGGGGAAGCGCGTAACTTTGGTGATCTTAATGATCCTAATAGCAAGGTTTCTCA
ATTGGTTCGCGACAACAAGGTATACGCCATGTTAGCCGATGCCGGTACTAAGCCAAATATCTTCTATATCGGCTTACCGG
AACAACCTAAAGATAAACAAATTTTGTCACTTAACTTCCTCGAATGGCAACGCTAG

Protein sequence : 
MLDRRSILKMAAGGAMLTLIPSAQLQAKTPDKRLAMVFDVRRCTGCLSCTVSCAMENQTDAGRCRTRVNQAAIETELGLA
TLAVPNQCNQCDNPACVYVCPVEATYKRKEDGIVVINHDECIHCQLCVDACPYGARRKDETLNSPPEKCNFCIHRVSVGL
LPACVETCIGEARNFGDLNDPNSKVSQLVRDNKVYAMLADAGTKPNIFYIGLPEQPKDKQILSLNFLEWQR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ttrB YP_216393.1 tetrathionate reductase complex subunit B Virulence SPI-2 Protein 1e-42 44
ttrB NP_805056.2 tetrathionate reductase subunit B Virulence SPI-2 Protein 1e-42 44
ttrB NP_456142.1 tetrathionate reductase subunit B Virulence SPI-2 Protein 1e-42 44
ttrB NP_460350.1 tetrathionate reductase complex subunit B Virulence SPI-2 Protein 1e-42 44
ttrB CAB37414.1 tetrathionate reductase subunit B (TtrB) Virulence SPI-2 Protein 7e-43 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shal_4009 YP_001676208.1 4Fe-4S ferredoxin VFG0486 Protein 4e-43 44