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Name : ureC (Shal_3467) Accession : YP_001675671.1 Strain : Shewanella halifaxensis HAW-EB4 Genome accession: NC_010334 Putative virulence/resistance : Virulence Product : urease subunit alpha Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0804 EC number : - Position : 4222534 - 4224237 bp Length : 1704 bp Strand : + Note : ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alp DNA sequence : ATGGCTAAGATTTCAAGACAGGCCTATGCCGATATGTTTGGGCCAACCGTTGGCGACCGAGTTCGCTTGGCGGATACCGC GTTAATGTTAGAGGTCGAACAAGATCTCACAACTTATGGTGAAGAAGTAAAGTTTGGGGGCGGTAAGGTGATCCGCGATG GTATGGGTCAAAGCCAAGCGTTAAGCAAAGATTGCGTCGATGCAGTGATCACCAACGCCCTTATTCTCGACCACTGGGGC ATAGTCAAAGCCGATATAGGTATCAAGCACGGTCGTATTGTCGGTATTGGTAAAGCTGGAAACCCTGATGTGCAGCCAAA CGTAGATATTGTTATTGGCGCAGGCACTGAGGCTATAGCGGGAGAAGGCAAGATTATTACTGCTGGGGCGATTGATACTC ATGTGCATTTTATCTGCCCCCAGCAAGTTGAAGAAGCTTTATGCGCAGGAACTACAACCTTCATCGGTGGTGGTACAGGG CCTGTAGCAGGTTCAACCGCAACCACTGTAACGCCTGGCATTTGGAACATGCATCGTATGCTAGAAGCTGCCGATGAACT ACCGATCAATGTGGGTTTATTTGGTAAAGGCACCGTCAGCAATCCTGATGCGATTCGTGAGCAAATAGCAAACGGTGCAA TGGGTCTAAAAATCCATGAGGATTGGGGTGCAACGCCTGCCGCTATCGATACCTGCATGACGGTGGCCGATGAGATGGAC GTACAAGTGGCCATTCACTCAGATACATTAAACGAAGGTGGCTTTTATGAAGCAACCACTAAAGCCATTGGCGATCGTGT TATTCACGTATTCCACACCGAGGGTGCTGGCGGTGGACATGCCCCGGATGTGATTAAGTCTGTGGGTGAGCCTAATATCA TCCCAGCGTCAACAAACCCAACGATGCCTTACACCATTAATACCGTTGACGAACATTTAGATATGTTGATGGTCTGCCAT CATTTAGACCCCGCTATAGCTGAGGATGTCGCTTTTGCCGAATCGCGTATTCGCCGCGAAACCATCGCCGCCGAAGATAT TTTGCATGATTTAGGAGCGATCTCAGTCATGAGTTCTGATTCGCAAGCAATGGGACGAGTTGCCGAAGTGGCGATGCGTA CTTGGCAATGCGCTCATAAAATGAAATTACAGCGAGGACCGCTCGAGGGGGATTCTGAGTTATCGGATAATACACGCCTT AAACGTTATGTGGCCAAGTACACCATTAACCCTGCCATCACCCATGGTATTAGTCATGAGGTAGGCTCGATTGAAAAGGG AAAGCTTGCGGATATCGTATTGTGGGATCCGGCGTTCTTTGGAGTAAAACCTGCTTTAGTATTGAAAGGAGGTTTAGCCG TTTATGCACCAATGGGAGATATCAATGGTGCAATCCCGACCCCACAACCTGTGCATTACCGCCCAATGTACGCGGCGACA GGTAAAGCACGAGCAGCAACATCAATGACCTTTTTGCCAAAAGCGGCAATTGAAGCGGGTATTACAGAAAAGCTTAAGCT GACTCACCTTATTGGAGAGGTCAAAGGCTGCCGCAATATTCGCAAAAAAGACATGATCCATAATAGCTATACCCCAGTGA TTGAACTCGATTCACAAACTTATGTGGTAAAGGCCGACGGTATGGCCTTGGTATGTGAGCCGTTAGCCGAGCTACCAATG GCACAGCGCTACTTCTTGTTTTAA Protein sequence : MAKISRQAYADMFGPTVGDRVRLADTALMLEVEQDLTTYGEEVKFGGGKVIRDGMGQSQALSKDCVDAVITNALILDHWG IVKADIGIKHGRIVGIGKAGNPDVQPNVDIVIGAGTEAIAGEGKIITAGAIDTHVHFICPQQVEEALCAGTTTFIGGGTG PVAGSTATTVTPGIWNMHRMLEAADELPINVGLFGKGTVSNPDAIREQIANGAMGLKIHEDWGATPAAIDTCMTVADEMD VQVAIHSDTLNEGGFYEATTKAIGDRVIHVFHTEGAGGGHAPDVIKSVGEPNIIPASTNPTMPYTINTVDEHLDMLMVCH HLDPAIAEDVAFAESRIRRETIAAEDILHDLGAISVMSSDSQAMGRVAEVAMRTWQCAHKMKLQRGPLEGDSELSDNTRL KRYVAKYTINPAITHGISHEVGSIEKGKLADIVLWDPAFFGVKPALVLKGGLAVYAPMGDINGAIPTPQPVHYRPMYAAT GKARAATSMTFLPKAAIEAGITEKLKLTHLIGEVKGCRNIRKKDMIHNSYTPVIELDSQTYVVKADGMALVCEPLAELPM AQRYFLF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ureC | NP_286680.1 | urease subunit alpha | Virulence | TAI | Protein | 0.0 | 72 |
| ureC | NP_287088.1 | urease subunit alpha | Not tested | TAI | Protein | 0.0 | 72 |
| ureC | YP_005684266.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 3e-161 | 63 |
| ureC | YP_005682174.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 3e-161 | 63 |
| ureC | YP_003784325.1 | urease subunit alpha | Not tested | PiCp 7 | Protein | 3e-161 | 63 |
| ureC | YP_005686358.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 3e-161 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ureC | YP_001675671.1 | urease subunit alpha | VFG0270 | Protein | 2e-143 | 59 |
