|
Name : Shal_3246 (Shal_3246) Accession : YP_001675452.1 Strain : Shewanella halifaxensis HAW-EB4 Genome accession: NC_010334 Putative virulence/resistance : Virulence Product : ATPase Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 3957850 - 3960423 bp Length : 2574 bp Strand : - Note : PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: shw:Sputw3181_3141 ATPase AAA-2 domain protein DNA sequence : ATGCGACTCGATCGTATGACTAATAAATTCCAGATGGCGATCTCAGATGCTCAATCATTGGCGCTTGGCCGAGATCATCA ATTTATCGAACCATCACATTTGATGATGGCATTACTAAATCAAGATGGTGGTTCAATCCATCCACTACTCACGCAGGCAG GGATCCAAGTGAGTACCTTGCGTTCTTTATTGAGTAAGGATTTAGAGCAACGACCGCAAGTCGAAGGTACGGGCGGAGAC GTACAGTTATCGCAGGCATTAATTCGCCTATTGAATCTATGCGATAAGCTGGCGCAAAAACGTAAAGACAAGTTTATCTC TAGTGAACTGTTTGTATTAGCTGCGCTCGAGGGGAACGATGCCTTGACGCAAGCACTGAAACAATCGGGTGCGACGAAAG AGTTAATGGAATCGACAATCGACCAAATCCGTAATGGTCAAAACGTCGATGATCCTAACGCTGAAGATCAGCGACAAGCA CTTAAAAAGTTCACCGTTGATCTGACTGAGCGCGCCGAACAGGGGAAATTAGACCCTGTGATTGGTCGTGATGACGAAAT TCGTCGTACCATTCAGGTACTGCAGCGTCGTAGTAAAAATAACCCAGTATTGATTGGTGAGCCGGGCGTAGGTAAAACGG CGATTGTTGAGGGGCTAGCTCAACGGATCATTAATAATGAGGTGCCTGAAGGCATCAAGAATAAGCGTGTATTATCACTC GATATGGGTGCATTAGTGGCTGGTGCTAAATACCGTGGTGAATTTGAAGAGCGCTTAAAAGCGGTGCTCAATGAGCTGTC TCAAGAAGAGGGGCAAGTGATCCTCTTTATTGACGAGCTACACACTATGGTTGGTGCGGGTAAGTCTGATGGCGCAATGG ATGCGGGTAATATGCTTAAACCTGCATTAGCACGGGGCGATCTTCACTGTGTTGGTGCGACGACATTAGATGAGTACAGA CAATATATTGAAAAAGATGCAGCGCTTGAGCGTCGCTTCCAAAAAGTATTGGTGGATGAGCCGAGTGTTGAAGATACCAT CGCTATTTTGCGTGGTTTAAAAGAGCGCTATGAGCTGCATCATCATGTAGAGATCACCGATCCTGCCATTGTTGCGGCGG CAAGTATGTCGCACCGTTATATCTCAGACCGTAAGCTGCCCGACAAGGCAATCGATCTCATTGACGAAGCCGCATCAAGT ATTCGTATTCAGATTGACTCTAAGCCGGAATCTTTAGATAGGTTAGAGAGGCGTGCTATTCAGTTAAAGCTTGAAGAGCA AGCACTGAGCAAAGAAGCAGATGAGGCGAGTTTACGTCGCCTAGATGTTTTGCGCGCAGAGCTTAAAGATGTTGAGGCAA AAGCTGCAGAGTTAAATGAAATTTGGCGTACCGAAAAAGCAGCTTTAGCAGGGACTCAGCATATTAAAGCAGATCTTGAG CAAGCGCGTATGGATCTAGAAGTCGCAAGACGCGCGGGTGACTTAACTCGTATGTCTGAGTTGCAGTACGGACGTATTCC AGAGCTTGAAAAGCAACTGGACTTAGCGTCGCAAGCTGAAATGCAGGATATGACCTTGCTACGTAATAAGGTTACAGACG TTGAGATCGCCGAAGTGCTGTCAAAGGCGACAGGTATTCCTGTGTCTAAGATGCTTGAAGGTGAGCGTGACAAGTTACTC AAGATGGAAGATGCGCTACATGAGCGTGTGATTGGCCAAAATGAAGCTGTGAACTCTGTATCGAATGCGATTCGTCGTAG CCGCGCAGGTCTTTCCGATCCCGACCGTCCTATCGGTTCATTCCTATTCTTAGGCCCAACCGGTGTGGGTAAGACAGAGC TATGTAAGGCACTTGCTAAGTTCCTGTTTGATACCGAGTCGGCATTAGTGCGAATCGATATGTCAGAATTTATGGAAAAG CATTCAGTTTCACGGTTGGTCGGTGCCCCTCCAGGATATGTGGGTTATGAAGAGGGTGGCTATTTAACAGAAGCGGTTAG GCGTAAGCCATATTCGGTGATCCTACTTGATGAAGTAGAAAAAGCGCATCCAGATGTATTTAATATCTTATTACAGGTAT TAGATGATGGCCGCTTGACCGATGGTCAAGGGCGTACGGTTGATTTTAGAAATACCGTGGTGATAATGACCTCTAATTTA GGTTCTGATCTGATCCAGATGGGTTTTGGCAAACAAACCTATGATGAGATGAAGTTTGATGTAATGCAGGTTGTTACGCA GAATTTCAGACCTGAATTTTTGAACCGTATCGATGAGGCCGTCGTATTTCATCCTCTTCATGAGAAAAATATTGCTCATA TTGCGGCTATCCAAATTGAGGGTTTGAAACAGCGTCTTGCAGAAAAAGATTATGGGCTTGAGATTTCTAAAGATGCTCTG TCATTTATTGCTCGAGTTGGATTCGATCCCATCTATGGTGCAAGACCGCTTAAACGGGCTTTGCAACAAGAAGTTGAAAA TCCGTTAGCCCAACAGATCCTCAGTGGACAATTATTACCAGGTAAGGATATTAAGGTTTCAGTTGAAGACGATGTGCTGG TCTTTAGCCAGTAA Protein sequence : MRLDRMTNKFQMAISDAQSLALGRDHQFIEPSHLMMALLNQDGGSIHPLLTQAGIQVSTLRSLLSKDLEQRPQVEGTGGD VQLSQALIRLLNLCDKLAQKRKDKFISSELFVLAALEGNDALTQALKQSGATKELMESTIDQIRNGQNVDDPNAEDQRQA LKKFTVDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINNEVPEGIKNKRVLSL DMGALVAGAKYRGEFEERLKAVLNELSQEEGQVILFIDELHTMVGAGKSDGAMDAGNMLKPALARGDLHCVGATTLDEYR QYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYELHHHVEITDPAIVAAASMSHRYISDRKLPDKAIDLIDEAASS IRIQIDSKPESLDRLERRAIQLKLEEQALSKEADEASLRRLDVLRAELKDVEAKAAELNEIWRTEKAALAGTQHIKADLE QARMDLEVARRAGDLTRMSELQYGRIPELEKQLDLASQAEMQDMTLLRNKVTDVEIAEVLSKATGIPVSKMLEGERDKLL KMEDALHERVIGQNEAVNSVSNAIRRSRAGLSDPDRPIGSFLFLGPTGVGKTELCKALAKFLFDTESALVRIDMSEFMEK HSVSRLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL GSDLIQMGFGKQTYDEMKFDVMQVVTQNFRPEFLNRIDEAVVFHPLHEKNIAHIAAIQIEGLKQRLAEKDYGLEISKDAL SFIARVGFDPIYGARPLKRALQQEVENPLAQQILSGQLLPGKDIKVSVEDDVLVFSQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 2e-161 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Shal_3246 | YP_001675452.1 | ATPase | VFG0079 | Protein | 2e-131 | 41 |
