Gene Information

Name : Shal_3129 (Shal_3129)
Accession : YP_001675335.1
Strain : Shewanella halifaxensis HAW-EB4
Genome accession: NC_010334
Putative virulence/resistance : Virulence
Product : two component LuxR family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG4566
EC number : -
Position : 3819129 - 3819740 bp
Length : 612 bp
Strand : +
Note : PFAM: regulatory protein LuxR; response regulator receiver; KEGG: shw:Sputw3181_3638 response regulator receiver protein

DNA sequence : 
GTGCAACAACAAATCAATGGACCTGTCTATTTGGTCGATGATGACGAGGCGATTATCGACTCGATCGACTTTCTGATGGA
AGGTTATGGCTATAAGCTCAATAGCTTTAACTGTGGCGATCGTTTTTTGGCTGAAGTCGACTTAACCCAAGCTGGATGCG
TAATATTAGATGCGCGCATGCCGGGACTAACAGGGCCTCAAGTACAGCAACTACTCAGTGATGCGAAGAGCCCATTGGCT
GTAATTTTCTTAACTGGGCATGGCGATGTGCCTATGGCTGTGGATGCCTTTAAGAATGGGGCTTTTGACTTCTTCCAAAA
GCCTGTTCCGGGTAGCCTACTGTCACAATCTATCGCCAAAGGGCTTACTTACAGCATTGATCAACACTTAAAACGTACTA
ATCAGGCCTTGATTGATACTCTGTCCGAACGGGAAGCGCAGATCTTTCAATTAGTGATTGCCGGTAACACCAATAAACAG
ATGGCAAACGAGCTTTGTGTTGCGATTCGAACCATCGAAGTACACCGCTCAAAATTAATGACCAAGCTGGGAGTGAACAA
CCTAGCTGAACTCGTCAAACTGGCGCCGTTGCTCGCCCACAAGAGTGAATAA

Protein sequence : 
MQQQINGPVYLVDDDEAIIDSIDFLMEGYGYKLNSFNCGDRFLAEVDLTQAGCVILDARMPGLTGPQVQQLLSDAKSPLA
VIFLTGHGDVPMAVDAFKNGAFDFFQKPVPGSLLSQSIAKGLTYSIDQHLKRTNQALIDTLSEREAQIFQLVIAGNTNKQ
MANELCVAIRTIEVHRSKLMTKLGVNNLAELVKLAPLLAHKSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ttrR CAB37412.1 TtrR Virulence SPI-2 Protein 5e-33 42
ttrR YP_216395.1 tetrathionate reductase complex: response regulator Virulence SPI-2 Protein 8e-33 42
ttrR NP_456141.1 putative two-component response regulator Not tested SPI-2 Protein 8e-33 42
ttrR NP_805058.1 two-component response regulator Virulence SPI-2 Protein 8e-33 42
ttrR NP_460352.2 response regulator Virulence SPI-2 Protein 7e-33 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shal_3129 YP_001675335.1 two component LuxR family transcriptional regulator VFG0488 Protein 2e-33 42