Gene Information

Name : Shal_2710 (Shal_2710)
Accession : YP_001674922.1
Strain : Shewanella halifaxensis HAW-EB4
Genome accession: NC_010334
Putative virulence/resistance : Resistance
Product : beta-lactamase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG2602
EC number : 3.5.2.6
Position : 3289469 - 3290326 bp
Length : 858 bp
Strand : -
Note : PFAM: penicillin-binding protein transpeptidase; KEGG: syn:slr0319 beta-lactamase

DNA sequence : 
ATGAGTGTGCTTAAACCTAGCGATATAAAGACAAATAACAATACGGGATATTGGGCACGTCTTTTTCTTCCGCTAGCGGT
TTTTATTACCACACCTTTTCAGGTGTCGGCAGCACTTGAGGAACGTTCTGATTGGCAGCAATATTTTAATCACTACGATG
CCAAGGGGACGATAGTGGTGCGCGATGAGCGCGGCCCTAAAGCCAAGCTCTGGGTTGTTGATAGTGAGCGTGCCCAGCAG
AGGTTTTCACCTGCATCGACCTATAAAATTCCACACACGCTATTTGCTTTGGATGCCAAGCTGGTTAAAGATGAGTTTCA
GACGTTCAAATGGGATGGGGTCAAAAGAAGTTTCACGCTGCACAATCAAGATCAGAACCTGCGCTCAGCCATGCGATACT
CTGCAGTGTGGGTTTATGACGAATTTGCAAAACAACTTGGCGAACCAAAAGCCCAGCAATACTTGTCGCTAATTGATTAC
GGTAATGCCGACTCGAGCTTTGATAAAGTAATCGAAGACAGTGACAGTTACTGGATTGATGGCAAGTTGACTATCTCAGC
CACAGAACAAGTGGAATTTCTACAGGCTTTATATCGAAACGAATTACCTTTTGATTTAGCTGACCAGTTATTAGTTAAAG
ATATTATGATTGTTGAAGCGGGTAAAGATTGGATTTTACGGGCGAAAACAGGCTGGCAAGGGCAATATGGCTGGTGGGTT
GGTTGGGTAGAGTGGCCAGTAGGCCCAGTATTTTTTGCTTTAAATATCGATACACCAAATAGGATGAAAGATCTTTATAA
ACGAGAGACCATCACACGGGAGATCTTACAGTCTATTGAGGCGCTACCTGCTAAGTAA

Protein sequence : 
MSVLKPSDIKTNNNTGYWARLFLPLAVFITTPFQVSAALEERSDWQQYFNHYDAKGTIVVRDERGPKAKLWVVDSERAQQ
RFSPASTYKIPHTLFALDAKLVKDEFQTFKWDGVKRSFTLHNQDQNLRSAMRYSAVWVYDEFAKQLGEPKAQQYLSLIDY
GNADSSFDKVIEDSDSYWIDGKLTISATEQVEFLQALYRNELPFDLADQLLVKDIMIVEAGKDWILRAKTGWQGQYGWWV
GWVEWPVGPVFFALNIDTPNRMKDLYKRETITREILQSIEALPAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ACICU_00226 YP_001844885.1 Beta-lactamase class D Not tested AbaR20 Protein 2e-62 63
blaOXA-2 YP_005176242.1 beta-lactamase OXA-2 protein Not tested ICEPmu1 Protein 6e-65 62

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shal_2710 YP_001674922.1 beta-lactamase AF024602.1.gene3.p01 Protein 9e-63 63
Shal_2710 YP_001674922.1 beta-lactamase AF317511.1.gene5.p01 Protein 1e-61 63
Shal_2710 YP_001674922.1 beta-lactamase AY139598.1.gene3.p01 Protein 1e-62 63
Shal_2710 YP_001674922.1 beta-lactamase AF371964.1.gene1.p1 Protein 1e-62 63
Shal_2710 YP_001674922.1 beta-lactamase AF300985.1.gene1.p01 Protein 8e-61 62
Shal_2710 YP_001674922.1 beta-lactamase AF350424.1.gene1.p01 Protein 7e-60 62
Shal_2710 YP_001674922.1 beta-lactamase JF800667.1.gene2.p01 Protein 4e-61 62
Shal_2710 YP_001674922.1 beta-lactamase M95287.gene.p01 Protein 3e-65 62
Shal_2710 YP_001674922.1 beta-lactamase L07945.1.gene1.p01 Protein 2e-65 62
Shal_2710 YP_001674922.1 beta-lactamase Y10693.2.gene1.p2 Protein 2e-65 62
Shal_2710 YP_001674922.1 beta-lactamase EF552405.1.gene1.p01 Protein 6e-65 62
Shal_2710 YP_001674922.1 beta-lactamase AF315351.1.gene2.p01 Protein 4e-65 62
Shal_2710 YP_001674922.1 beta-lactamase GQ202693.1.gene2.p01 Protein 3e-65 62
Shal_2710 YP_001674922.1 beta-lactamase DQ522237.1.gene5.p01 Protein 2e-65 62
Shal_2710 YP_001674922.1 beta-lactamase JF795487.1.gene1.p01 Protein 7e-65 62
Shal_2710 YP_001674922.1 beta-lactamase U63835.1.gene1.p01 Protein 4e-65 62
Shal_2710 YP_001674922.1 beta-lactamase AY289608.1.gene2.p01 Protein 6e-64 62
Shal_2710 YP_001674922.1 beta-lactamase HQ700343.1.gene1.p01 Protein 8e-33 43
Shal_2710 YP_001674922.1 beta-lactamase JN205800.1.gene6.p01 Protein 1e-31 41
Shal_2710 YP_001674922.1 beta-lactamase HM015773.1.gene6.p01 Protein 8e-32 41
Shal_2710 YP_001674922.1 beta-lactamase AY500137.1.gene1.p01 Protein 3e-32 41