Gene Information

Name : Shal_2604 (Shal_2604)
Accession : YP_001674819.1
Strain : Shewanella halifaxensis HAW-EB4
Genome accession: NC_010334
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 3159582 - 3160310 bp
Length : 729 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_2402 ABC transporter-related protein

DNA sequence : 
ATGTCTGAAAATAGCGCCATAACCGTAAGTCACCTAATTAAATCAGTTGTTACTCAAGAGGGAGAACTGACTATCCTCAA
CGGCATTAATATGGATGTCAAGCATGGACAGAGTGTGGCTATTCTTGGGCCATCGGGTTCGGGTAAGTCAACCTTACTTG
GCTTGCTCGCAGCATTAGATTCACCCACTAGCGGTTCGATAAAACTCGATGGTGTTGCCCTAGAAGATCTCAATGAAGAG
AGTAAGGCATCCCTACGTAAACAAAAAGTTAGCTTCATTTTTCAATCTTTCATGTTGGTCGATACCTTAAATGCGCTGGA
GAACGTCATGCTGCCAGCAGAGCTTGCCGGCGTTGCTAAGGCCAAAGAGAAGGCCGAGGCGATGCTAGTGCGAGTGGGAC
TAAGTCATCGTTTAACTCATTTCCCGAATCAGCTATCGGGCGGTGAGCAACAAAGAGTGGCGATTGCCAGAGCCTTTATC
TGTGAACCTAAAGTGCTGTTTGCCGATGAACCAACGGGAAATCTAGATTCGGCGAATAGCGATAAGATTGCTGACATGTT
GTTTGAGCTTAACCGTGAAAGTGACACGACCTTGGTACTCGTGACCCACGATATGACGCTTGCGAGTCGTTGCCAGAGAC
AGTTCATTATGGACTCAGGCTATTTGAGCGAAAAACAGAGCGAAAAGCACAAAAGTGATATCGTCGATGAGGCAAGCGCA
TGGAGCTAA

Protein sequence : 
MSENSAITVSHLIKSVVTQEGELTILNGINMDVKHGQSVAILGPSGSGKSTLLGLLAALDSPTSGSIKLDGVALEDLNEE
SKASLRKQKVSFIFQSFMLVDTLNALENVMLPAELAGVAKAKEKAEAMLVRVGLSHRLTHFPNQLSGGEQQRVAIARAFI
CEPKVLFADEPTGNLDSANSDKIADMLFELNRESDTTLVLVTHDMTLASRCQRQFIMDSGYLSEKQSEKHKSDIVDEASA
WS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-22 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-23 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-23 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-23 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shal_2604 YP_001674819.1 ABC transporter-like protein NC_008702.1.4606598. Protein 9e-26 42
Shal_2604 YP_001674819.1 ABC transporter-like protein NC_012469.1.7686878. Protein 4e-27 41