Gene Information

Name : Shal_2005 (Shal_2005)
Accession : YP_001674225.1
Strain : Shewanella halifaxensis HAW-EB4
Genome accession: NC_010334
Putative virulence/resistance : Resistance
Product : hexapaptide repeat-containing transferase
Function : -
COG functional category : R : General function prediction only
COG ID : COG0110
EC number : -
Position : 2418903 - 2419556 bp
Length : 654 bp
Strand : +
Note : PFAM: transferase hexapeptide repeat containing protein; KEGG: vfi:VFA0790 chloramphenicol acetyltransferase

DNA sequence : 
ATGAACACCTTTACAAGCTGGTTAGAGTCTAAAAAGCTAAAAGAACAAATTGTTAACCCCAATATCCAAGTCGGTGAGTA
TTCTTACTATTCGGGCTTTTATCACGGGAAGTCGTTTGAAGATCAAGCGGTGCGTTATCTACTCGGTGATGACTCAACCA
TCGATGTGTGGGAGGCTGGGGTATTTGGTGAAGTCGATAAGCTCATTATCGGTAAGTTCTGCGCTATCGCCTCGGGCGCG
TGTTTTATGCTGGCCGGTAATCAGGGCCATCGGCTCGATTGGATCTCAACCTATCCTTTCTCAGCCGAAGAGTTTGGTGA
TGGGGTGAAGAGTGGCTTTGAGCGCGCTGGCGATACGGTTATTGGCAACGATGTATGGATCGGTAGTGAAGCGATGATCA
TGCCTGGTGTGACCATAGGTGATGGCGCGGTGATTGGGGCGAGGGCTGTGATCAGTAAAGATGTCGCGCCTTACAGTGTG
GTGGTGGGCAGTAATAAACTGGTGAAGCAGCGATTTCCCAGTGAGTCAGTCGAAAAACTACAACAGATAAAGTGGTGGGA
TTGGCCGTTAGAAAAGCTTCAAGTTGCGATGCCTATTCTATGCAGTGGTGATATCGACGCTTTGCATCAATATTATCTAG
AGCAAATGAAATAA

Protein sequence : 
MNTFTSWLESKKLKEQIVNPNIQVGEYSYYSGFYHGKSFEDQAVRYLLGDDSTIDVWEAGVFGEVDKLIIGKFCAIASGA
CFMLAGNQGHRLDWISTYPFSAEEFGDGVKSGFERAGDTVIGNDVWIGSEAMIMPGVTIGDGAVIGARAVISKDVAPYSV
VVGSNKLVKQRFPSESVEKLQQIKWWDWPLEKLQVAMPILCSGDIDALHQYYLEQMK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
catB8 YP_005797132.1 chloramphenicol acetyltransferase Not tested AbaR4e Protein 7e-44 54
catB3 AET25385.1 chloramphenicol acetyltransferase Not tested PAGI-2(C) Protein 2e-43 53
catB3 AFG30108.1 chloramphenicol acetyltransferase Not tested PAGI-2 Protein 2e-43 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shal_2005 YP_001674225.1 hexapaptide repeat-containing transferase JF268688.1.gene6.p01 Protein 1e-43 56
Shal_2005 YP_001674225.1 hexapaptide repeat-containing transferase AY123251.gene2.p01 Protein 2e-44 54
Shal_2005 YP_001674225.1 hexapaptide repeat-containing transferase AF322577.2.gene4.p01 Protein 8e-44 53
Shal_2005 YP_001674225.1 hexapaptide repeat-containing transferase AY740681.1.gene5.p01 Protein 8e-44 53
Shal_2005 YP_001674225.1 hexapaptide repeat-containing transferase NC_002516.2.878374.p Protein 1e-41 51
Shal_2005 YP_001674225.1 hexapaptide repeat-containing transferase CP001581.1.gene990.p Protein 2e-49 48
Shal_2005 YP_001674225.1 hexapaptide repeat-containing transferase NC_011595.7057349.p0 Protein 1e-26 43
Shal_2005 YP_001674225.1 hexapaptide repeat-containing transferase NC_010410.6000796.p0 Protein 1e-26 43
Shal_2005 YP_001674225.1 hexapaptide repeat-containing transferase NC_011586.7045146.p0 Protein 9e-27 43
Shal_2005 YP_001674225.1 hexapaptide repeat-containing transferase AM180355.1.gene2499. Protein 6e-34 42