Gene Information

Name : Shal_1501 (Shal_1501)
Accession : YP_001673726.1
Strain : Shewanella halifaxensis HAW-EB4
Genome accession: NC_010334
Putative virulence/resistance : Virulence
Product : UDP-glucose/GDP-mannose dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1004
EC number : -
Position : 1805885 - 1807054 bp
Length : 1170 bp
Strand : +
Note : PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: she:Shewmr4_1330 UDP-glucose 6-dehydrogenase

DNA sequence :
ATGATGAAAATTGCTATAGCAGGTACAGGCTATGTTGGTCTGTCAAACGCAGTATTATTGGCGCAAAAAAACACAGTCGT
GGCTGTTGATATTATCGCCGAAAAAGTTGAGATGATTAACCAAGGTTGCTCACCTATAGCCGATGCAGAGATAGAAGATT
ATCTGAGTAACCATAAACTTGATTTAACCGCTACGTTAGATAAACAGTTAGCGTATCAAGATGCAGACTATGTGGTTATT
GCCACACCTACCGATTACGATACCCATTCTAACTACTTTAATACTTCTTCGGTTGAGGCGGTAATTCAAGATGTGTTAGC
TATTAATCCTAGCGCGGTGATGGTGATTAAATCTACCGTGCCGGTTGGCTATACAGAGTCCGTTAAGCAAAAATTTAACA
CTCAGAATATTATCTTCTCGCCGGAATTTCTGCGCGAAGGTCGTGCCTTATACGACAATCTACATCCTTCACGGATCATT
ATCGGTGAGCGCTCTGAGCGCGCTAGCGTATTTGCTAACTTACTTAGCGATGCTGCGATTAAACAGAATATCGATATTCT
TTATACCGACTCGACCGAAGCTGAGGCGGTTAAGCTTTTTTCTAATACTTACCTTGCAATGCGAGTCGCTTATTTCAATG
AATTAGACAGCTATGCAGAGTCCCATGGCTTAGACTCACGCCAAATTATTGAAGGTGTAGGCCTTGACCCGCGTATTGGC
AATCACTACAACAATCCATCTTTTGGTTACGGTGGTTATTGTTTGCCAAAAGACACTAAGCAACTGCGTGCAAACTATCA
GAATGTGCCTAACAGCTTGATTAGCGCGATTGTCGATGCCAACTCTACCCGTAAAGACTTTATTGCCGACTCTATAATTA
ACAAGCAGCCAAAAGTCGTTGGTATCTACCGCTTAATCATGAAGTCGGGTTCCGATAACTTCCGCGCATCGTCTATTCAA
GGCATTATGAAGCGCATTAAAGCCAAGGGTATTGAGGTTGTGGTTTTTGAGCCAGTGCTAAATGAGCCAGAGTTTTTTAA
TTCTCGCGTAATGCAAGACCTCAACGAATTTAAGCAGATTTCAGATGTCATAGTGTCAAACCGAATGGTTGACGAGCTGG
CAGATGTCGCTGCTAAAGTTTATACACGCGATCTGTTTGGATCGGATTGA

Protein sequence :
MMKIAIAGTGYVGLSNAVLLAQKNTVVAVDIIAEKVEMINQGCSPIADAEIEDYLSNHKLDLTATLDKQLAYQDADYVVI
ATPTDYDTHSNYFNTSSVEAVIQDVLAINPSAVMVIKSTVPVGYTESVKQKFNTQNIIFSPEFLREGRALYDNLHPSRII
IGERSERASVFANLLSDAAIKQNIDILYTDSTEAEAVKLFSNTYLAMRVAYFNELDSYAESHGLDSRQIIEGVGLDPRIG
NHYNNPSFGYGGYCLPKDTKQLRANYQNVPNSLISAIVDANSTRKDFIADSIINKQPKVVGIYRLIMKSGSDNFRASSIQ
GIMKRIKAKGIEVVVFEPVLNEPEFFNSRVMQDLNEFKQISDVIVSNRMVDELADVAAKVYTRDLFGSD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0068 YP_300158.1 UDP-glucose 6-dehydrogenase Not tested SCC15305cap Protein 1e-94 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shal_1501 YP_001673726.1 UDP-glucose/GDP-mannose dehydrogenase VFG0963 Protein 8e-102 56