Gene Information

Name : Shal_0132 (Shal_0132)
Accession : YP_001672367.1
Strain : Shewanella halifaxensis HAW-EB4
Genome accession: NC_010334
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 146245 - 146922 bp
Length : 678 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_0097 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGAAAATACTCATGGTTGAAGATGATGCGACTACCATCGAATATGTCGTAAAGGGATTTGTTGAGCAAGGGCACAATAT
AGAAACGGCAACAGACGGTCATCAAGGCTTATTGCTGGCTACCAGCATGAAGTACGACTTGATCATTTTGGATCGTATGT
TGCCACAGCTAGACGGGCTAAAACTGTTAGCGGCGCTACGCGCCACGGGTAGTCAAACACCAGTATTGATCTTGTCTGCA
CTCAGTCACGTTGACGAGCGAGTCAAAGGTTTGCGTGCTGGTGGCGATGACTATATGACAAAGCCTTTCGCTTTCTCTGA
ATTGTTGGTTCGCGCCGAAAAGTTAATGCAACGTGGTGAATCGCTGCCCACTATTACCGACTTGAATGTCGGTCCGCTCA
CTATTGAACTGCTGACACGTAAAGTGACCTTAGATGGGCAAGAGATCTTGCTGCAGCCGAAAGAGTTCCAGTTACTTAAG
TACCTGATGGAACATGTGAATCAAGTTATCAGTCGCACGCTACTGTTTGAAGCTGTGTGGGATTATCATTTCGATCCGCG
TACTAATGTTATCGATGTGCATATCGCTAAGCTAAGACGTAAGTTTGAAGAGCTAGGCCATGGCGAATTAATCGAAACGG
TTCGAGGTGCTGGATATCGGTTACGCCAAGGGCATTAA

Protein sequence : 
MKILMVEDDATTIEYVVKGFVEQGHNIETATDGHQGLLLATSMKYDLIILDRMLPQLDGLKLLAALRATGSQTPVLILSA
LSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGESLPTITDLNVGPLTIELLTRKVTLDGQEILLQPKEFQLLK
YLMEHVNQVISRTLLFEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRLRQGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-41 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-40 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shal_0132 YP_001672367.1 two component transcriptional regulator BAC0347 Protein 1e-45 45
Shal_0132 YP_001672367.1 two component transcriptional regulator BAC0111 Protein 2e-46 45
Shal_0132 YP_001672367.1 two component transcriptional regulator BAC0083 Protein 3e-42 45
Shal_0132 YP_001672367.1 two component transcriptional regulator BAC0197 Protein 5e-39 44
Shal_0132 YP_001672367.1 two component transcriptional regulator BAC0125 Protein 7e-40 43
Shal_0132 YP_001672367.1 two component transcriptional regulator BAC0308 Protein 2e-41 43
Shal_0132 YP_001672367.1 two component transcriptional regulator BAC0638 Protein 9e-39 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shal_0132 YP_001672367.1 two component transcriptional regulator VFG0596 Protein 1e-41 45
Shal_0132 YP_001672367.1 two component transcriptional regulator VFG1389 Protein 4e-37 45