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Name : Shal_1231 (Shal_1231) Accession : YP_001673459.1 Strain : Shewanella halifaxensis HAW-EB4 Genome accession: NC_010334 Putative virulence/resistance : Virulence Product : DNA mismatch repair protein MutS Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0249 EC number : - Position : 1494804 - 1497383 bp Length : 2580 bp Strand : - Note : This protein performs the mismatch recognition step during the DNA repair process DNA sequence : ATGACCGCTATTGATCCGCAAGGCTTAGAAAAACACACCCCTATGATGCGTCAATATCTGACGTTAAAAGCCCAACATCC TGACATGTTGCTCTTTTATCGAATGGGGGATTTCTATGAGCTCTTCTATGAAGATGCCAAAAGAGCTTCAGAACTACTTG GGATCTCATTAACCGCACGAGGAAAAAGTGGTGGTGACCCTATTCCTATGGCAGGCCTGCCCTATCATGCGGTTGAAGGT TATTTAGCGAAGTTAGTACAACTACGAGTATCAGTCGCGATTTGCGAACAGATTGGTGATCCTGCAACGTCTAAGGGACC GGTTGAACGTAAAGTGGTACGCATCGTTACCCCTGGTACCCTAACCGATGAAGCCTTACTCCAAGAAAGACAAGACAACT TACTTGCGGCGCTTTACCAAGGTAAAACAGGCTACGGTTATGCTACCTTAGATGTCGCATCGGGACGTTTTGTCATTACT GAACTTGCCAATACCGAAGCACTAGAAGCTGAGTTACAGCGGACAAACCCAGCAGAGCTCCTCTATAGTGAAGACTTCTC TGAGATGAGTCTAATTGCTGCAATAAATGGCACTCGCCGTCGACCAGAGTGGGAGTTCGATTACGATACTTGCCATCGAT TATTGCTCAATCAGTTCGGCACGAAAGATTTAAAAGGCTTTGGTATCGAGGACGCTAGACTGTCACTCCAAGCTGCAGGC TGCTTGATGCAGTACGTCAAAGATACTCAACGTACCGCACTACCGCATATCAACTCGATTGTGCGTTTTAACCAATCTGA CAGCATAGTGCTAGATGCTGCAACTCGTCGTAATCTAGAGTTAACAGTGAACTTGCAAGGCGGCCGAGAAAACACCCTCG CCTCCGTGCTCGATAACACCGTGACACCTATGGGGAGCCGCATGTTACAGCGCTGGCTCCATCAGCCGCTTCGCGACCAT GACATTATTCGCGCAAGACAGGTCTCGATTGAAGAGTTACTAGGTAACGCTAACTATGAGATTCTATCGGAAGATCTTAA GGCCATCGGAGATATTGAGCGAATTACCACACGTATCGCACTGCGTAACGCTCGTCCTCGTGACTTTGCTCGCCTGCGTC AAGCGCTCGCATTATTACCTCAGTTGCAACAAACGCTAACTCAAGCTGCTGCTCCGCACCTTAAATATCTATCACAAGTG ATTGGTGAATTCCCCGATGAACTCGAACTACTATCGCGAGCCGTAGTCGATAATCCTCCGATGCTTATTCGTGATGGTGG TGTGATCCGTGAAGGCTACAATGAAGAGCTCGACCAATGGCGTAAACTCAGTGAAGGCGCAACCGATTACCTTCACGAGC TTGAAGCGCGCGAGAAACAGCAAACCGGAATTTCAACATTAAAAGTCGGCTACAACCGTGTCCATGGCTATTATATCGAA GTCAGCCGCCGAGAATCTGACTTAGTTCCACTCAGTTACCAACGTAGACAGACACTAAAGAATACTGAACGCTATATTAT ACCAGAGCTTAAAGAGCACGAGGAAAAGGTATTATCTAGCCAAGGAAGAGCGTTAGCGCTTGAAAAACAGCTTTGGGAAC AACTGTTTGATCTTATCTTGCCTAAATTACATGAGCTGCAAGATTTTGCGAGAGCCTCTGCTGAACTAGACGTGCTATGC AACTTTGCTGAACGTGCAGAGAGCCTAAACTATCACTGTCCTGACCTATCAACTGCTCCTGGGATCCAGATAGAAGCAGG TCGCCACCCAGTTGTAGAGCAAGTTAGCCAAAGCCCGTTTATTGCCAACCCTGTTACGTTAAACAATGAACGCAAGATGT TAATTGTGACCGGCCCCAATATGGGCGGTAAATCAACCTATATGCGTCAAGTTGCGTTAATAACCCTAATGGCACATATT GGGTGCTACGTGCCTGCAGAGCATGCCGTTATTGGCCCAGTTGATAGAATATTCACTCGAATTGGTGCATCTGATGATTT AGCCTCTGGCCGTTCGACCTTCATGGTCGAGATGACCGAAACAGCCAACATCTTACATAACGCCACGCCTAACAGTTTGG TGTTGATGGATGAAATAGGTCGTGGTACATCGACCTATGATGGTCTGTCACTCGCTTGGTCTGCTGCGGAGTATTTAGCG AAACACCTACAGGCAATGACGCTATTTGCGACCCATTACTTTGAACTGACTCAACTACCAGAGCTACTATCAAATGTAGA AAACGTGCATTTAGATGCCGTCGAGCATGGTGATAGCATTGTATTTATGCACGCCGTACAAGAGGGTGCTGCGAGTCGCA GTTATGGCCTACAGGTAGCCGCTCTTGCAGGTGTGCCTAACTGTGTGATTAGCGCTGCAAAGCATAAGTTGCATCAGTTA GAAAGTCGCGATCATGGAAAAGAGTCCTGCGATGCCCAGCAGCCTTTACAGCAAAGCATAAGCTTTTCAGCACCAACGCC ATCTCCTGCTTTAGAGGCGTTAGCCAAGCTAAACCCTGATGAGTTGACGCCAAGACAGGCATTAGATTACCTCTACAATC TTAAGAAATTGGCATTGTAG Protein sequence : MTAIDPQGLEKHTPMMRQYLTLKAQHPDMLLFYRMGDFYELFYEDAKRASELLGISLTARGKSGGDPIPMAGLPYHAVEG YLAKLVQLRVSVAICEQIGDPATSKGPVERKVVRIVTPGTLTDEALLQERQDNLLAALYQGKTGYGYATLDVASGRFVIT ELANTEALEAELQRTNPAELLYSEDFSEMSLIAAINGTRRRPEWEFDYDTCHRLLLNQFGTKDLKGFGIEDARLSLQAAG CLMQYVKDTQRTALPHINSIVRFNQSDSIVLDAATRRNLELTVNLQGGRENTLASVLDNTVTPMGSRMLQRWLHQPLRDH DIIRARQVSIEELLGNANYEILSEDLKAIGDIERITTRIALRNARPRDFARLRQALALLPQLQQTLTQAAAPHLKYLSQV IGEFPDELELLSRAVVDNPPMLIRDGGVIREGYNEELDQWRKLSEGATDYLHELEAREKQQTGISTLKVGYNRVHGYYIE VSRRESDLVPLSYQRRQTLKNTERYIIPELKEHEEKVLSSQGRALALEKQLWEQLFDLILPKLHELQDFARASAELDVLC NFAERAESLNYHCPDLSTAPGIQIEAGRHPVVEQVSQSPFIANPVTLNNERKMLIVTGPNMGGKSTYMRQVALITLMAHI GCYVPAEHAVIGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATPNSLVLMDEIGRGTSTYDGLSLAWSAAEYLA KHLQAMTLFATHYFELTQLPELLSNVENVHLDAVEHGDSIVFMHAVQEGAASRSYGLQVAALAGVPNCVISAAKHKLHQL ESRDHGKESCDAQQPLQQSISFSAPTPSPALEALAKLNPDELTPRQALDYLYNLKKLAL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| mutS | AAA80578.1 | DNA mismatch repair protein | Virulence | SPI-1 | Protein | 0.0 | 64 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Shal_1231 | YP_001673459.1 | DNA mismatch repair protein MutS | VFG0562 | Protein | 0.0 | 67 |
