Gene Information

Name : Shal_0987 (Shal_0987)
Accession : YP_001673220.1
Strain : Shewanella halifaxensis HAW-EB4
Genome accession: NC_010334
Putative virulence/resistance : Virulence
Product : aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : -
Position : 1214585 - 1216084 bp
Length : 1500 bp
Strand : +
Note : PFAM: aldehyde dehydrogenase; KEGG: shw:Sputw3181_3079 aldehyde dehydrogenase (NAD(+))

DNA sequence : 
ATGAGCACACCAGAAAGTCGTAGTCAGTGGCAAGCGTTAGCAGATTCTATGTCGATAAACGGTTCAGCTTTTATTGCAGG
CGAGTACCTTGACGCGCAGTCAAAGCAAACCTTTGACTGTATCAGCCCGATTGATGGCAAAGTCTTAGTCAAGGTGGCAA
GTTGCGATGAGGCCGATGCTAATATCGCAGTTAAAAATGCCAGAGAGACCTTTGAAACTGGTGTGTGGGCAAACCTTGCG
CCAGTTAAGCGTAAGCAAGTGATGATCCGTTTTGCCGAATTGTTGGAGCAAAATGCCGATGAACTCGCGCTGCTAGAAAC
TTTAGATATGGGCAAACCCATTCAATACTCTAAGGCGGTGGATGTGGCCGGTGCGGCTCGAGCCATTCGCTGGTCTGGCG
AAGCGATTGATAAAATTTACGATGAGATCGCGCCGACAGCCCATAATGAAATTGGCATGATCACCCGCGAAGCCGTAGGC
GTAGTTGCGGCGATTGTGCCGTGGAACTTCCCGATGCTGATGGCGTGTTGGAAGCTCGGCCCAGCTTTAGCCACAGGTAA
TAGCGTGGTACTTAAACCTTCTGAAAAGTCTCCGTTAACCGCTATTCGTATGGCGCAAATTGCCGTCGAAGCGGGACTGC
CAAAAGGCGTACTAAACGTGCTACCAGGTTTTGGTCATACCGTGGGTAAGGCGCTAGCGCTGCATATGGATGTCGATACC
TTGGTATTTACCGGCTCAACTAAAATTGCTAAGCAGTTGATGATCTACGCGGGTGAGTCAAACATGAAGCGGGTCTGGTT
AGAAGCGGGCGGTAAGAGCCCAAATATTATCTTTAATGATGCGCCGGATCTTAAAAAGGCTGCAGAGGCCGCAGCTTGTG
CAATTGCCTTTAATCAAGGCGAAGTTTGCACGGCTGGCTCACGTTTGCTGGTGGAATCAGGGGTAAAAGATGAGCTTATC
GCCTTGATAGCCGAAGAGCTTAAGGGCTGGACGCCAGGGCATCCGCTGGATCCAAGTACCACTTCTGGCGCTGTTGTCGA
TAAACAACAGTTAGATAATGTGCTGGGTTATATACAGTCGGGAATCGATGAAGGCGCGACCTTAAATCATGGTGGCACTC
AGGTGATGCAAGAGTCGGGCGGGGTGTATATCGAGCCGACTATTTTCTCGGATGTAGACAATAAGATGACCATAGCGAAA
GAGGAGATCTTCGGCCCCGTGTTATCGGTGATCACTTTCGATGGCATGGAGCAGGCGATTGAGATAGCAAACGACACCAT
CTACGGCCTCGCGGCGGGTGTATGGACTGCTGATATCAATAAGGCCCACAAGACGGCTAAGGCACTTCGCAGTGGCATGG
TGTGGATTAATCACTATGATGGCGGCGATATGACGGCGCCATTTGGCGGCTATAAGCAGTCGGGTAATGGCCGGGATAAG
TCACTGCATGCGTTTGATAAATACACTGAAATTAAGGCCACTTGGTTGGTGTTGGAATAA

Protein sequence : 
MSTPESRSQWQALADSMSINGSAFIAGEYLDAQSKQTFDCISPIDGKVLVKVASCDEADANIAVKNARETFETGVWANLA
PVKRKQVMIRFAELLEQNADELALLETLDMGKPIQYSKAVDVAGAARAIRWSGEAIDKIYDEIAPTAHNEIGMITREAVG
VVAAIVPWNFPMLMACWKLGPALATGNSVVLKPSEKSPLTAIRMAQIAVEAGLPKGVLNVLPGFGHTVGKALALHMDVDT
LVFTGSTKIAKQLMIYAGESNMKRVWLEAGGKSPNIIFNDAPDLKKAAEAAACAIAFNQGEVCTAGSRLLVESGVKDELI
ALIAEELKGWTPGHPLDPSTTSGAVVDKQQLDNVLGYIQSGIDEGATLNHGGTQVMQESGGVYIEPTIFSDVDNKMTIAK
EEIFGPVLSVITFDGMEQAIEIANDTIYGLAAGVWTADINKAHKTAKALRSGMVWINHYDGGDMTAPFGGYKQSGNGRDK
SLHAFDKYTEIKATWLVLE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF SG19 AAN62241.1 putative aldehyde dehydrogenase Not tested PAGI-3(SG) Protein 1e-128 55
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 3e-75 41
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 2e-76 41
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 2e-76 41
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 2e-76 41
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 4e-76 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shal_0987 YP_001673220.1 aldehyde dehydrogenase VFG0082 Protein 1e-75 41