Gene Information

Name : PputGB1_0836 (PputGB1_0836)
Accession : YP_001667082.1
Strain : Pseudomonas putida GB-1
Genome accession: NC_010322
Putative virulence/resistance : Virulence
Product : two component heavy metal response transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 948274 - 948948 bp
Length : 675 bp
Strand : -
Note : TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN0943 DNA-binding heavy metal response regulator

DNA sequence : 
ATGCGTGTGCTGATCATCGAAGACGAAGAAAAAACCGCCGACTACCTGCATCGCGGCCTGAGCGAACAGGGCTTTACCGT
GGACCTGGCGCGGGACGGCATCGATGGCCTGCACCTGGCCTTGGAGGGTGACTACGCGGTAATCGTGCTGGATGTGATGC
TGCCAGGCCTGGACGGTTATGGCGTGCTGCGCGCCTTGCGCGCTCGCAAGCAAACGCCGGTGATCATGCTGACCGCCCGC
GAGCGTGTCGAAGACCGCATCCATGGGCTGCGTGAGGGCGCTGACGATTACCTGGGCAAGCCGTTCTCGTTCCTCGAACT
GGTCGCCCGCCTGCAGGCCCTGACCCGGCGCAGCAGCAGCCACGAACCGCTGCAGGTGCAGGTGGCAGACCTGTGGATCG
ACCTGATGGCGCGCAAGGCCACTCGCGCCGGTCAACGCCTGGATCTGACGGCCAAGGAGTTCTCGTTATTGAGCGTGCTG
GCCCGGCGGCAGGGTGAAATCCTGTCGAAGACGGCGATTGCCGAGCTGGTCTGGGACATCAACTTCGACAGCGATGCCAA
CGTCGTGGAAGTGGCAATCAAGCGCCTGCGCGCGAAACTCGACGGGCCTTTCGACAACAAGTTGCTGCACACCATCCGAG
GCATGGGCTATGTCCTGGAAAACCGTGCGGGGTAA

Protein sequence : 
MRVLIIEDEEKTADYLHRGLSEQGFTVDLARDGIDGLHLALEGDYAVIVLDVMLPGLDGYGVLRALRARKQTPVIMLTAR
ERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSSSHEPLQVQVADLWIDLMARKATRAGQRLDLTAKEFSLLSVL
ARRQGEILSKTAIAELVWDINFDSDANVVEVAIKRLRAKLDGPFDNKLLHTIRGMGYVLENRAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-55 54
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-54 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputGB1_0836 YP_001667082.1 two component heavy metal response transcriptional regulator BAC0125 Protein 1e-62 57
PputGB1_0836 YP_001667082.1 two component heavy metal response transcriptional regulator BAC0083 Protein 2e-57 57
PputGB1_0836 YP_001667082.1 two component heavy metal response transcriptional regulator BAC0197 Protein 9e-59 56
PputGB1_0836 YP_001667082.1 two component heavy metal response transcriptional regulator BAC0111 Protein 2e-58 54
PputGB1_0836 YP_001667082.1 two component heavy metal response transcriptional regulator BAC0638 Protein 1e-50 54
PputGB1_0836 YP_001667082.1 two component heavy metal response transcriptional regulator BAC0308 Protein 9e-55 51
PputGB1_0836 YP_001667082.1 two component heavy metal response transcriptional regulator BAC0347 Protein 1e-51 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputGB1_0836 YP_001667082.1 two component heavy metal response transcriptional regulator VFG0596 Protein 7e-56 54
PputGB1_0836 YP_001667082.1 two component heavy metal response transcriptional regulator VFG1389 Protein 1e-37 47
PputGB1_0836 YP_001667082.1 two component heavy metal response transcriptional regulator VFG1386 Protein 7e-35 44