Gene Information

Name : PputGB1_5425 (PputGB1_5425)
Accession : YP_001671642.1
Strain : Pseudomonas putida GB-1
Genome accession: NC_010322
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 6057247 - 6058080 bp
Length : 834 bp
Strand : +
Note : PFAM: Integrase catalytic region; KEGG: pen:PSEEN3944 transposase, IS3 family (orf 2)

DNA sequence : 
GTGCGGCGCCTATGCCAAACCCTAAAGGTGCATCCCAGCGGCTACTACGCCTGGCTGACCGAGCCTCAATCTGCCCGAGC
AAAAGAAGATCATCGTCTGCTTGGCTTGATCAAACATGCTTGGCTCGAAAGCGGAGGTGTGTACGGCTACCGCAAAATTC
ATGATGACCTGCGTGAGCTGGGAGAGACATGCGGGCGCAATCGAGTCGGACGCTTGATGCAGGCAGAGGGGTTGCGTTCG
CAAACGGGCTATCGGCGGCGTCCAGGGTTTTACGGTGGAAAGCCAACAGTGGCCTCTCCCAACCATCTCGCGCGGCAGTT
CAAAGTCAGTGAGCCGAATAAGGTCTGGGTAACCGATATCACTTACATCCGCACCTATGAAGGATGGCTGTACCTAGCGG
TAGTCCTGGATCTGTTTTCCCGCCAAGTGATTGGCTGGTCAATGAAGCCCCGCATGTGCAGCGACCTGGCGCTTGACGCG
ATGTTGATGGCCGTGTGGCGCCGCAAACCACGGCAGCAAGTGATGATCCATTCAGACCAAGGCAGTCAATTCAGTAGCTC
AGACTGGCAAAGCTTCTTGAAGGCCAACAATATAATCAGCAGCATGAGTCGGCGGGGAAATTGCCACGACAATGCCGTAG
CCGAAAGCTTTTTCCAGCTTTTGAAGCGGGAGCGAATCCGACGAAAAATCTACGCAACACGTGACGAAGCCCGAAGTGAT
ATTTTCGATTACATTGAAATGTTTTATAACCCAAGGCGCAGACACAGCAGTGCTATGCAGCTGTCGCCAGTAGAGTATGA
GAAACGCTATTTTCTGAGCTTGGAGAGTGTCTAG

Protein sequence : 
MRRLCQTLKVHPSGYYAWLTEPQSARAKEDHRLLGLIKHAWLESGGVYGYRKIHDDLRELGETCGRNRVGRLMQAEGLRS
QTGYRRRPGFYGGKPTVASPNHLARQFKVSEPNKVWVTDITYIRTYEGWLYLAVVLDLFSRQVIGWSMKPRMCSDLALDA
MLMAVWRRKPRQQVMIHSDQGSQFSSSDWQSFLKANNIISSMSRRGNCHDNAVAESFFQLLKRERIRRKIYATRDEARSD
IFDYIEMFYNPRRRHSSAMQLSPVEYEKRYFLSLESV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 3e-41 45
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 1e-31 44
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 1e-31 44
tnpB CAB61574.1 transposase B Not tested HPI Protein 1e-40 44
unnamed CAI43898.1 putative transposase Not tested LEE Protein 2e-30 44
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 2e-30 44
unnamed AAC31485.1 L0006 Not tested LEE Protein 1e-29 44
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 2e-29 44
tnpA AAD44733.1 TnpA Not tested SHI-2 Protein 5e-36 44
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 1e-29 43
Z5089 NP_290241.1 transposase Not tested LEE Protein 2e-29 43
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 5e-33 43
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 6e-40 42
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 6e-40 42
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 6e-40 42
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 4e-35 41
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-35 41
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 4e-35 41
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 3e-35 41
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-35 41
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-35 41
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-35 41
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-35 41
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 2e-42 41
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 8e-43 41
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 5e-43 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputGB1_5425 YP_001671642.1 integrase catalytic subunit VFG1484 Protein 6e-32 44
PputGB1_5425 YP_001671642.1 integrase catalytic subunit VFG0785 Protein 8e-30 43
PputGB1_5425 YP_001671642.1 integrase catalytic subunit VFG1122 Protein 2e-35 41