|
Name : rph (PputGB1_5342) Accession : YP_001671559.1 Strain : Pseudomonas putida GB-1 Genome accession: NC_010322 Putative virulence/resistance : Unknown Product : ribonuclease PH Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0689 EC number : 2.7.7.56 Position : 5965931 - 5966653 bp Length : 723 bp Strand : - Note : RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs DNA sequence : ATGAAACGTCCAAGTGGTCGCGCCGCCGATCAGCTTCGCTCGATCCGCATCACCCGCAACTACACCAAGCACGCCGAAGG GTCGGTACTGGTTGAGTTCGGTGACACCAAGGTCATTTGCACGGTCAGCGTGGAAAACGGTGTACCGCGCTTCCTCAAAG GCCAGGGCCAAGGCTGGCTGACCGCCGAATATGGCATGCTGCCGCGCTCCACCGGCGAACGTAACCAGCGCGAAGCCAGC CGTGGCAAGCAGGGTGGCCGCACCCTGGAAATCCAGCGCCTGATCGGCCGTTCGCTGCGTGCGGCGCTCGACATGAGCAA GCTCGGTGACATCACCCTGTACGTTGACTGCGACGTGATCCAGGCCGATGGCGGTACCCGTACCGCGTCCATCACTGGCG CCATGGTCGCCCTGTGCGATGCCCTGGCGGTGATCAAGAAGCGCGGTGGCCTCAAGGCCGGCAACCCGCTCAAGCACATG ATCGCTGCCGTGTCGGTGGGCATGTACCAGGGCGAAGCCGTACTCGACCTGGACTACCCGGAAGACTCCGCTGCCGAAAC CGACCTGAACGTGGTCATGACCAGTGCCGGCGGCTTCATCGAAGTGCAGGGTACTGCCGAAGGCGCACCGTTCCAGCCGG AAGACTTCAACGCCATGCTCGCCCTGGCGCAGAAGGGCATGAACGAGATCTTCGAACTGCAGCAGGCCGCACTGGCTGAC TGA Protein sequence : MKRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRSTGERNQREAS RGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQADGGTRTASITGAMVALCDALAVIKKRGGLKAGNPLKHM IAAVSVGMYQGEAVLDLDYPEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFELQQAALAD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| rph | YP_001800860.1 | ribonuclease PH | Not tested | Not named | Protein | 7e-65 | 59 |
