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Name : PputGB1_5223 (PputGB1_5223) Accession : YP_001671441.1 Strain : Pseudomonas putida GB-1 Genome accession: NC_010322 Putative virulence/resistance : Virulence Product : putative sigma-54 specific transcriptional regulator Function : - COG functional category : K : Transcription COG ID : COG3829 EC number : - Position : 5836425 - 5837255 bp Length : 831 bp Strand : - Note : PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: pen:PSEEN5263 sigma-54 dependent transcriptional regulator DNA sequence : ATGACTTTTCAAAACCCGTTTGGCCAGCCGCTGCTGACCTTCCCCGAGCTGGACAAGAGCCCGCTGAGCATTCGTGCCAA GGCGCTGGTGTTCATCGACCCGCGCTCGCAGCAGCTGCGCGAGGACCTTGAGCGCCTGGCGCCACAACCTGTGCCGGTGC TGATCCGTGGCGAAACCGGCACCGGCAAGGAGCTGCTGGCCCGGCAGATCCACCGTGCCAGCGACCGTGGCGGGCTGTTC GTGTCGGTCAACTGCGCGGCCATCAGCCCCACCTACGCCGATGCCGAATTGTTCGGCTATAGCGCCGGCAGTCATGGCGG CACAGCCAGCAGCCGCGCCGGCTGGTTTGGCTCGGCCAATGGCGGCACGCTGTACCTGGACGAGATTGCCGACTTGCCGC TGGCCATCCAGGGCAAGTTGCTGGCCGCACTGGAAAACCGTGAGGTCACCCGGGTTGGCGCGCAGCAGCCACAGCCAGTG GATGTGCGCCTGGTCGCCGCGACCAGCATCGACCTGGCGCGCGTGGTACGTGCGGGGCGCTTCAACGAGCGCCTGTACCA GTACCTGCGCGAGGGGGCGCTGGAACTGCCGCCGCTGCGTGAACGGCCGGGCGACATCCTGCCGCTGGCCGAGTACTTCG TGGGCATTTACAGCGTGCGCCTGCAGCGGCCCGTGCCGTTGGTGAGCGAGGCGGCGCAGCAGGTGCTGGAAGCGCATTTC TGGCCCGGCAACACCCGCGAGCTGGAGAACGTGATCCACTTTGCCTTGCTGGTGAATGACGGCGCAGAGATCCTGCCGGA GGACCTCGACCTGGCCAATCCCGCGCGCTAG Protein sequence : MTFQNPFGQPLLTFPELDKSPLSIRAKALVFIDPRSQQLREDLERLAPQPVPVLIRGETGTGKELLARQIHRASDRGGLF VSVNCAAISPTYADAELFGYSAGSHGGTASSRAGWFGSANGGTLYLDEIADLPLAIQGKLLAALENREVTRVGAQQPQPV DVRLVAATSIDLARVVRAGRFNERLYQYLREGALELPPLRERPGDILPLAEYFVGIYSVRLQRPVPLVSEAAQQVLEAHF WPGNTRELENVIHFALLVNDGAEILPEDLDLANPAR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpS | ABQ88367.1 | HrpS | Virulence | Hrp PAI | Protein | 2e-39 | 44 |
| hrpS | AAA17650.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 2e-39 | 44 |
| hrpR | AAT96162.1 | HrpR | Virulence | T-PAI | Protein | 8e-37 | 44 |
| hrpR | AAT96216.1 | HrpR | Virulence | T-PAI | Protein | 8e-37 | 44 |
| hrpS | AAC35800.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 8e-36 | 43 |
| hrpS | AAT96161.1 | HrpS | Virulence | T-PAI | Protein | 3e-33 | 43 |
| hrpS | AAT96215.1 | HrpS | Virulence | T-PAI | Protein | 3e-33 | 43 |
| hrpS | NP_791207.1 | type III transcriptional regulator HrpS | Virulence | Hrp PAI | Protein | 2e-35 | 42 |
| hrpS | AAC34753.1 | HrpS | Virulence | Hrp PAI | Protein | 1e-35 | 42 |
| hrpR | NP_791206.1 | type III transcriptional regulator HrpR | Virulence | Hrp PAI | Protein | 1e-36 | 41 |
| hrpR | AAC34752.1 | HrpR | Virulence | Hrp PAI | Protein | 7e-37 | 41 |
| hrpR | AAC35799.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 3e-36 | 41 |
