|
Name : PputGB1_4975 (PputGB1_4975) Accession : YP_001671195.1 Strain : Pseudomonas putida GB-1 Genome accession: NC_010322 Putative virulence/resistance : Unknown Product : thiamine biosynthesis protein ThiC Function : - COG functional category : H : Coenzyme transport and metabolism COG ID : COG0422 EC number : - Position : 5549465 - 5551345 bp Length : 1881 bp Strand : - Note : required for the synthesis of the hydromethylpyrimidine moiety of thiamine DNA sequence : ATGACCAAACAAGAAAAAGCGATCAACCTCAGCGAATCGGCACAAGTCGATCAGCAGTCCGTGCAACCGTTCCCGCGTTC GCGCAAGGTCTATGTCGAAGGCTCGCGCCCGGACATCCGTGTACCCATGCGTGAAATCAGCCTGGATGACACCCCTACCG ATTTTGGTGGCGAGACCAATGCCCCGGTGCTGGTGTACGACACCTCCGGCCCATACACCGACCCCAACGTGATCATCGAC GTGCGCAAAGGCCTGGCCGACGTGCGTTCAGCGTGGATCGACGCCCGTGGTGACACCGAGCGCCTGGACGGCCTGAGCTC CGACTTCGGCCAGCAGCGCCTGAACGACGCCGAGCTGGCCAAGCTGCGTTTCGCCCATGTGCGCAACCCGCGTCGTGCCA AGGCGGGTGCCAACGTCTCGCAGATGCACTATGCCCGCCGGGGCATCATCACCGCCGAGATGGAATACGTGGCCATCCGC GAAAACATGAAGCTGCAGGAGGCCCGCGCAGCTGGCCTGCTCAAAGAGCAGCATGCTGGCCACAGCTTCGGTGCCAACAT CCCGAAAGAAATCACCCCCGAATTCGTCCGCCAGGAAATCGCCCGTGGCCGCGCGATCATTCCGGCCAACATCAACCACC CGGAAGTTGAGCCGATGATCATCGGCCGCAATTTCCTGGTGAAGATCAACGGCAACATCGGCAACAGCGCCTTGGGGTCC TCGATCGAGGAAGAAGTGGCCAAGCTGACCTGGGGCATCCGCTGGGGCTCGGACACGGTCATGGACCTGTCCACCGGCAA GCACATTCACGAAACCCGCGAGTGGATCATCCGCAACTCGCCGGTGCCGATCGGCACCGTGCCGATCTATCAGGCCCTGG AAAAGGTCAACGGCGTGGCCGAGGACCTGATCTGGGAGCTGTTCCGCGACACACTGATCGAGCAGGCCGAGCAGGGGGTG GACTACTTCACTATCCACGCCGGTGTGCTGCTGCGTTATGTGCCGCTGACCGCCAAGCGTGTCACCGGTATCGTCAGCCG TGGGGGCTCGATCATGGCCAAGTGGTGCCTGGCGCATCACAAGGAAAACTTCCTGTACACCCACTTCGACGAAATCTGCG AAATCATGAAGGCCTACGACGTCAGCTTCTCGCTGGGCGACGGCCTGCGCCCTGGCTCGATTGCCGACGCCAACGACGCC GCGCAGTTCGGTGAGCTGGAAACCCTCGGCGAACTGACCAAGATTGCCTGGAAGCACGACGTGCAATGCATGATCGAAGG CCCTGGCCACGTGCCGATGCAGTTGATCAAAGAGAACATGGACAAGCAGCTGGAGTGCTGCGACGAAGCGCCGTTCTACA CCCTCGGCCCACTGACCACCGACATTGCTCCGGGCTACGACCACATCACTTCGGGTATTGGTGCGGCGATGATCGGCTGG TTCGGTTGCGCCATGCTGTGCTACGTCACGCCCAAGGAACATTTGGGCCTGCCGAACAAAGACGACGTCAAGACCGGCAT CATCACCTACAAGATCGCCGCGCATGCCGCCGACCTTGCCAAGGGCCACCCAGGTGCGCAGATTCGCGACAACGCCCTGT CGAAGGCGCGTTTCGAGTTCCGTTGGGAAGACCAGTTCAACCTTGGCCTTGACCCGGACACGGCCCGTGCCTTCCACGAC GAGACGCTGCCGAAGGAATCGGCCAAGGTCGCGCACTTCTGCTCGATGTGCGGGCCGAAGTTCTGCTCGATGAAGATCAC CCAGGAAGTGCGTGAGTACGCCGCCAAGATCGAGGCCGTGGATGTGACGGTCGAAGAAGGCATGCGTGAGCAGGCCGAGC GGTTCCGCCAGGAAGGCAGCCAGCTGTACCACAAAGTGTAA Protein sequence : MTKQEKAINLSESAQVDQQSVQPFPRSRKVYVEGSRPDIRVPMREISLDDTPTDFGGETNAPVLVYDTSGPYTDPNVIID VRKGLADVRSAWIDARGDTERLDGLSSDFGQQRLNDAELAKLRFAHVRNPRRAKAGANVSQMHYARRGIITAEMEYVAIR ENMKLQEARAAGLLKEQHAGHSFGANIPKEITPEFVRQEIARGRAIIPANINHPEVEPMIIGRNFLVKINGNIGNSALGS SIEEEVAKLTWGIRWGSDTVMDLSTGKHIHETREWIIRNSPVPIGTVPIYQALEKVNGVAEDLIWELFRDTLIEQAEQGV DYFTIHAGVLLRYVPLTAKRVTGIVSRGGSIMAKWCLAHHKENFLYTHFDEICEIMKAYDVSFSLGDGLRPGSIADANDA AQFGELETLGELTKIAWKHDVQCMIEGPGHVPMQLIKENMDKQLECCDEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGW FGCAMLCYVTPKEHLGLPNKDDVKTGIITYKIAAHAADLAKGHPGAQIRDNALSKARFEFRWEDQFNLGLDPDTARAFHD ETLPKESAKVAHFCSMCGPKFCSMKITQEVREYAAKIEAVDVTVEEGMREQAERFRQEGSQLYHKV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00317 | YP_008207782.1 | Thiamine biosynthesis protein ThiC | Not tested | AbaR25 | Protein | 0.0 | 77 |
| BJAB0868_00321 | YP_008211647.1 | Thiamine biosynthesis protein ThiC | Not tested | AbaR26 | Protein | 0.0 | 77 |
| thiC | YP_001598318.1 | thiamine biosynthesis protein ThiC | Not tested | MDA | Protein | 0.0 | 74 |
