Gene Information

Name : PputGB1_4745 (PputGB1_4745)
Accession : YP_001670967.1
Strain : Pseudomonas putida GB-1
Genome accession: NC_010322
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 5304068 - 5304556 bp
Length : 489 bp
Strand : +
Note : PFAM: DNA repair protein RadC; KEGG: pmy:Pmen_1181 DNA repair protein RadC

DNA sequence : 
ATGAAATATCACAAGCTCAAGGCGAGTGGCACCTACGTTATGGAATCACCCATCACCGAGGCCGACATCTCGCAGATGGC
GCAACAACTGGCCATGAGTCGTCTGTCTAAAGGCCGGGCACTGACTGAGCCGAAGCAGGTGTTCAGTCACCTGCAAACAC
TGTTGCAGTACCACGAGTATGAAGTCTTTGCCCTGCTACTGCTCGACTCCAAACATCGGGTCATAGGCTTTAGAGAACTG
TTCAGAGGCACTCTGGATGGCGCGAGCGTGTACCCGAGAGAGGTGGTCAAGATCGCATTGGAGCACAATGCTGCGGCCGT
CATTATGGTTCACAATCATCCCTCCGGTGACCCAGAACCCAGTCAAGCCGATCGTACCTTGACCACTACCCTCAAGAACG
CTTTGAACATGGTCGGCACCCGCATATTGGATCATGTGGTGGTTGGCCATGAAGGTTGCGTCTCGTTGGCCGAACAAGGC
TATCTATAG

Protein sequence : 
MKYHKLKASGTYVMESPITEADISQMAQQLAMSRLSKGRALTEPKQVFSHLQTLLQYHEYEVFALLLLDSKHRVIGFREL
FRGTLDGASVYPREVVKIALEHNAAAVIMVHNHPSGDPEPSQADRTLTTTLKNALNMVGTRILDHVVVGHEGCVSLAEQG
YL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 3e-31 51
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 5e-29 51
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 5e-29 51
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-29 51
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 2e-22 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputGB1_4745 YP_001670967.1 DNA repair protein RadC VFG1119 Protein 1e-29 51