Gene Information

Name : fliP (PputGB1_3917)
Accession : YP_001670143.1
Strain : Pseudomonas putida GB-1
Genome accession: NC_010322
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : 3.1.1.3
Position : 4362635 - 4363390 bp
Length : 756 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGAGCGGCGCGCTGCGTACGATGTTGACTCTGGCGCTGCTGCTGGCCGCGCCGCTGGCCCTGGCCGCCGACCCGCTGTC
GATCCCGGCCATTACGCTGTCCAATACCGCGGACGGGCAGCAGGAGTATTCGGTCAGCCTGCAAATCCTGCTGATCATGA
CGGCGCTGAGCTTCATCCCGGCGTTCGTCATCCTGATGACCAGCTTCACCCGCATCATCATCGTGTTCTCGATCCTGCGT
CAGGCCCTGGGCCTGCAGCAGACGCCATCGAACCAGTTGCTCACCGGCATGGCGCTGTTTCTGACCATGTTCATCATGGC
CCCGGTGTTCGACCGGGTGAACCAGGACGCCCTGCAGCCTTACCTGAAGGAGCAGATGACGGCCCAGCAGGCCATCGACA
AGGCCCAGGGGCCGCTCAAGGACTTCATGCTGGCGCAAACCCGGCAAAGCGACCTCGACCTGTTCATGCGCCTGTCCAAG
CGTACCGACATCGCCGGCCCCGACCAGGTGCCGCTGACCATCCTGGTGCCAGCGTTCGTCACCTCCGAGTTGAAGACGGC
GTTCCAGATCGGTTTCATGATTTTCATCCCGTTCCTGATCATCGACATGGTGGTGGCCAGTGTGCTGATGGCCATGGGTA
TGATGATGCTGTCGCCGCTGATCATCTCGCTGCCGTTCAAGATCATGCTGTTCGTGCTGGTGGATGGCTGGGCGCTGATC
ATGGGCACCCTGGCCAGCAGTTTCGGCGGCGTCTGA

Protein sequence : 
MSGALRTMLTLALLLAAPLALAADPLSIPAITLSNTADGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILR
QALGLQQTPSNQLLTGMALFLTMFIMAPVFDRVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLSK
RTDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI
MGTLASSFGGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 9e-30 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 9e-30 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 9e-30 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-31 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-32 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 8e-33 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-32 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-32 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-32 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-22 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 9e-23 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 6e-33 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 8e-33 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 8e-33 41
escR AAK26700.1 EscR Virulence LEE Protein 6e-33 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 8e-33 41
escR AAL57527.1 EscR Virulence LEE Protein 6e-33 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 8e-33 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 4e-32 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 6e-33 41
escR CAI43889.1 EscR protein Virulence LEE Protein 6e-33 41
escR AAC31528.1 L0049 Virulence LEE Protein 6e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_001670143.1 flagellar biosynthesis protein FliP VFG1259 Protein 8e-90 83
fliP YP_001670143.1 flagellar biosynthesis protein FliP VFG2016 Protein 4e-67 61
fliP YP_001670143.1 flagellar biosynthesis protein FliP VFG2338 Protein 5e-62 60
fliP YP_001670143.1 flagellar biosynthesis protein FliP VFG2494 Protein 6e-65 60
fliP YP_001670143.1 flagellar biosynthesis protein FliP VFG0519 Protein 5e-33 41
fliP YP_001670143.1 flagellar biosynthesis protein FliP VFG0188 Protein 1e-34 41
fliP YP_001670143.1 flagellar biosynthesis protein FliP VFG0044 Protein 1e-34 41
fliP YP_001670143.1 flagellar biosynthesis protein FliP VFG0394 Protein 7e-33 41
fliP YP_001670143.1 flagellar biosynthesis protein FliP VFG0827 Protein 3e-33 41