|
Name : PputGB1_3712 (PputGB1_3712) Accession : YP_001669938.1 Strain : Pseudomonas putida GB-1 Genome accession: NC_010322 Putative virulence/resistance : Virulence Product : lysine decarboxylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : 4.1.1.18 Position : 4126197 - 4128470 bp Length : 2274 bp Strand : - Note : PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: pen:PSEEN3557 arginine/lysine/ornithine decarboxylase DNA sequence : ATGTCCTTCGGAGGTAGCCACCTGATGTACAAGGACCTCAAGTTCCCGATCCTCATCGTCCACCGGGCTATCAAGGCTGA CAGTGTCGCCGGGGAGCGCGTGCGGGGCATCGCCGAGGAACTGCGCCAGGACGGTTTCGCCATTCTGGCCGCCGCCGACC ACGCCGAAGCGCGCCTGGTTGCCGCCACTCACCACGGCCTGGCCTGCATGCTGATTGCCGCCGAAGGAGTTGGCGAAAAC ACCCACCTGCTGCAGAACATGGCCGAGCTGATCCGCCTGGCGCGCATGCGCGCGCCCGACTTGCCGATCTTCGCCTTGGG CGAGCAGGTGACCCTGGAAAACGCCCCTGCCGAAGCCATGAGCGAGCTCAACCAACTGCGTGGCATCCTTTACCTGTTCG AAGACACCGTGCCGTTTCTCGCCCGCCAGGTGGCGCGTGCCGCACACACCTACCTTGACGGTCTGCTGCCACCGTTCTTC AAGGCCCTGGTGCAGCATACCGCGCAGTCCAACTATTCCTGGCATACCCCGGGCCATGGCGGTGGCGTGGCCTATCATAA AAGCCCGGTAGGCCAGGCCTTCCACCAGTTCTTCGGGGAAAACACCCTGCGCTCGGACCTGTCTGTTTCAGTGCCGGAGC TGGGCTCGCTGCTCGACCACACAGGCCCCTTGGCCGAAGCCGAGGCCAGGGCGGCGCGCAACTTCGGTGCCGACCACACC TTCTTCGTCATCAATGGCACCTCCACAGCCAACAAGATTGTCTGGCACGCCATGGTCGGTCGCGACGACCTGGTGTTGGT GGACCGCAACTGCCATAAGTCAGTGGTGCACGCGATCATCATGACCGGCGCCATTCCGCTGTACCTGTGCCCAGAGCGCA ACGAGCTGGGCATCATCGGCCCGATCCCGCTCAGCGAGTTCAGCCCCGAGGCAATCGAGGCGAAGATCCAGGCCAACCCC CTTGCCCATGGCCGTGGGCAACGTATCAAGCTGGCGGTAGTGACCAACTCCACCTATGACGGGCTGTGCTACCACGCCGG GATGATCAAGCAGGCCCTGGGTGCCAGCGTGGAAGTACTGCACTTCGACGAGGCCTGGTTCGCTTATGCGGCGTTTCACG GCTTCTTCACCGGGCGCTATGCCATGGGCACTGCCTGCGCAGCCGACAGCCCGTTGGTGTTCAGCACCCATTCCACCCAC AAGCTGCTGGCGGCGTTCAGCCAGGCCTCGATGATCCATGTGCAGGACGGGGCCAGGCGGCAGCTGGACCGGGACCGCTT CAACGAAGCGTTCATGATGCATATCTCGACTTCGCCGCAGTACAGCATCCTTGCCTCGCTGGACGTGGCCTCGACCATGA TGGAAGGGCAGGCCGGGCATTCGCTGTTGCAAGAAATGTTCGATGAGGCGCTGAGTTTTCGTCGTGCCCTGGCCAACCTG CGCGAGCACATTGCTGCGGATGACTGGTGGTTCAGTATTTGGCAGCCGCCCAGCACTGAAGGCATCCAGCCCTTGGCCGC GCAGGACTGGCTGCTGCAGCCGGGGGCGCAGTGGCATGGCTTTGGTGAGGTGGCGGACGGCTACGTGTTGCTCGACCCTC TGAAGGTGACCCTGGTAATGCCGGGGCTGAGTGCGGGCGGTGTGCTGGGTGAGCGTGGCATCCCGGCGGCGGTGGTCAGC AAGTTTCTCTGGGAGCGCGGGCTGGTGGTGGAAAAAACCGGCTTGTACAGCTTCCTGGTGCTGTTTTCCATGGGCATCAC CAAGGGCAAGTGGAGCACCTTGCTCACCGAACTGCTGGAGTTCAAGCGCCACTATGACGGCAATACACCGCTGAGCAGTT GCCTGCCGAGTGTGGGGGTTGCCGATGCCTCACGCTACCGGGGCATGGGCCTGCGCGACCTGTGTGAACAGTTGCATGAC TGCTACCGTGCCAATGCCACGGCCAAGCAGCTGAAGCGGGTGTTCACGCGTTTGCCGGAGGTGGCCGTGAGCCCCGCTCG GGCTTATGACCAGATGGTACGTGGCGAGGTGGAAGCGGTGCCGATCGAAGCTTTGCTGGGCCGTGTGGCCGCGGTGATGC TGGTGCCGTACCCGCCCGGTATTCCGTTGATCATGCCGGGAGAGCGGTTCACCGAGGCGACCCGCTCGATACTTGACTAC TTGGCCTTCGCCCGAGCCTTCAACCAAGGCTTTCCGGGGTTTGTCGCGGATGTTCACGGCCTGCAGAACGAAAATGGCCG CTACACCGTGGATTGCATCATGGAATGCGAGTGA Protein sequence : MSFGGSHLMYKDLKFPILIVHRAIKADSVAGERVRGIAEELRQDGFAILAAADHAEARLVAATHHGLACMLIAAEGVGEN THLLQNMAELIRLARMRAPDLPIFALGEQVTLENAPAEAMSELNQLRGILYLFEDTVPFLARQVARAAHTYLDGLLPPFF KALVQHTAQSNYSWHTPGHGGGVAYHKSPVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPLAEAEARAARNFGADHT FFVINGTSTANKIVWHAMVGRDDLVLVDRNCHKSVVHAIIMTGAIPLYLCPERNELGIIGPIPLSEFSPEAIEAKIQANP LAHGRGQRIKLAVVTNSTYDGLCYHAGMIKQALGASVEVLHFDEAWFAYAAFHGFFTGRYAMGTACAADSPLVFSTHSTH KLLAAFSQASMIHVQDGARRQLDRDRFNEAFMMHISTSPQYSILASLDVASTMMEGQAGHSLLQEMFDEALSFRRALANL REHIAADDWWFSIWQPPSTEGIQPLAAQDWLLQPGAQWHGFGEVADGYVLLDPLKVTLVMPGLSAGGVLGERGIPAAVVS KFLWERGLVVEKTGLYSFLVLFSMGITKGKWSTLLTELLEFKRHYDGNTPLSSCLPSVGVADASRYRGMGLRDLCEQLHD CYRANATAKQLKRVFTRLPEVAVSPARAYDQMVRGEVEAVPIEALLGRVAAVMLVPYPPGIPLIMPGERFTEATRSILDY LAFARAFNQGFPGFVADVHGLQNENGRYTVDCIMECE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 4e-128 | 42 |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 4e-124 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PputGB1_3712 | YP_001669938.1 | lysine decarboxylase | VFG1670 | Protein | 3e-128 | 42 |
