Gene Information

Name : PputGB1_3624 (PputGB1_3624)
Accession : YP_001669851.1
Strain : Pseudomonas putida GB-1
Genome accession: NC_010322
Putative virulence/resistance : Unknown
Product : DNA topoisomerase III
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0550
EC number : -
Position : 4025856 - 4027814 bp
Length : 1959 bp
Strand : +
Note : decatenates replicating daughter chromosomes

DNA sequence :
ATGCGCCTGTTCCTCTGCGAAAAACCCTCCCAGGCAAAAGACATCGCCAAAGTGCTCGGCGCCAACCGCAAAGGCGACGG
CTGCTGGCAAGGCACCGACGTCTGCGTCACCTGGTGCATCGGCCACCTGCTGGAAACCGCCCCGCCCGACAGCTATGACG
AACGCTACAAGCGCTGGAACCTGGCCGACCTGCCGATCATTCCCGACAAGTGGAAGATGCTGGTCAAGCCCAAGACTGCC
AGCCAGTTCAAGGCGGTCAAGCGCCTGCTCGGCGAAGCACGGGAGCTGGTGATCGCCACCGACGCCGACCGCGAAGGCGA
AATGATCGCCCGCGAGCTGGTCGAGCATTGCCGCTACCGTGGCCCGGTGCAGCGCCTGTGGCTGTCGGCGCTGGATGACG
CCTCCATCCGCAAGGCCTTGGCGCGCCTGCTGCCGGGCCATGAAACGTTCAACCTGTACCATTCGGCGCTAGGTCGCTCG
CGCGCCGACTGGCTGATCGGCATGAACATGAGCCGGCTGTTCACCCTGCTGGGCCGCCAATCCGGCTACCAGGGCGTGCT
GCCGGTGGGCCGGGTACAAACACCTACCTTGCGCCTGGTGGTCGACCGCGACCGCAGCATCGCCGATTTCGTGCCGGTGC
CGTTCTGGGCCATCGAGGTGCAACTGGAACACGCCGCTCAGCGCTTCAATGCCCAATGGCGCGCCCCCGAAGACGCCTGC
GACGACCAGGGTCGCTGCCTGAAGCAGGACCTGGCACAACAGGCCGCCACCGACATCGGCAATGCCGCCACTGCCCGGGC
CGTCAAGGTAGCCACCGAGCGCGTGCGCGAAGCCGCGCCGCTGCCCTTCGACCTCGGCACCCTGCAGGAGCTGTGCTCGA
AAAAATTCGGCCTGGGCGCCCAGGAAACCCTCGACATTGCCCAGGCCCTGTACGAAACCCACAAACTGATCACCTACCCG
CGCAGCGATTGCGGCTACTTGCCGCAAAGCCAGCATGCCGAGGCACCCGCGATCCTCGCTGCACTGCAGCGAGCCGATGC
CAGCCTCACGCCGCTGCAACCCTACCTCGAACCGCAACGCCGCTCACGGGCCTGGAACGACGCCAAGGTCAGCGCCCACC
ACGGCATAATCCCCACTGCCGCCGCCAGTGACCCGTCGCGCCTGCCGGCCAAGCACAAGGCGGTGTATACCCTGATCCGC
GCCCGTTACCTGGCGCAGTTCCTGCCCAACCATGAGTACGATCGTACCCAGGCCGACTTCGACTGCGCTGGCCATGCCCT
GCGCGCGGTGGGCAAGCAAATTGTCGAACCGGGTTGGCGCCGTGCCCTGCCCGAAGCGCTGACGCCAGCCAAGGGTCGCG
AAGCCCCACCGGCCCAGGTGCTGCCAGCGCTGTGCGAAGGCCAGGACTGCACAGTGCATGGCCTGCAGCTGAAAGACCTG
TGGACCCAGCCGCCCAAGCCGTTCACCGAAGGCGACCTGATCAAGGCGATGAAGAACGTGGCCAAGCTGGTGGACGATCC
ACGACTGAAACAGAAGCTCAAGGAAACCACCGGCATCGGCACCGAGGCCACCCGCGCCAGTATTATCCAGGGCCTGCTCG
ACCGTGGTTACCTGGTGAAGAACGGCAAGGCATTGGCGGCCACGCCAGCAGCCTTCAGCCTGATCGACGCCGTGCCGCGC
GCCATTGCCGACCCAGGCACCACGGCAATCTGGGAGCAGGCGCTGGACATGGTGCAAAGCGGCGAGATGACCCTGGAAGA
GTTCGTCGCCAGGCAATCAACGTGGATGGGCAAGCTGGTCGAGCGGTGCAGTGGCATGCGCATGACAATCAGCGGGCCGG
CGGCCGGGGCGGCGCCTCCCTGGAAAAAGAAGCGTCGCGGTGGCGGAAAAAGCAAAGCGGCTGGAAGCAAGGCTACCGCC
AGCAAGCCGCGGCAGCCTCGGAAAAAGGCTTCAACCTGA

Protein sequence :
MRLFLCEKPSQAKDIAKVLGANRKGDGCWQGTDVCVTWCIGHLLETAPPDSYDERYKRWNLADLPIIPDKWKMLVKPKTA
SQFKAVKRLLGEARELVIATDADREGEMIARELVEHCRYRGPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRS
RADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVPFWAIEVQLEHAAQRFNAQWRAPEDAC
DDQGRCLKQDLAQQAATDIGNAATARAVKVATERVREAAPLPFDLGTLQELCSKKFGLGAQETLDIAQALYETHKLITYP
RSDCGYLPQSQHAEAPAILAALQRADASLTPLQPYLEPQRRSRAWNDAKVSAHHGIIPTAAASDPSRLPAKHKAVYTLIR
ARYLAQFLPNHEYDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALCEGQDCTVHGLQLKDL
WTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLVKNGKALAATPAAFSLIDAVPR
AIADPGTTAIWEQALDMVQSGEMTLEEFVARQSTWMGKLVERCSGMRMTISGPAAGAAPPWKKKRRGGGKSKAAGSKATA
SKPRQPRKKAST

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
topB AAN62317.1 putative DNA topoisomerase III Not tested PAGI-3(SG) Protein 0.0 65
topB AAN62194.1 putative DNA topoisomerase III Not tested PAGI-2(C) Protein 0.0 63
pph56 CAI36097.1 Topoisomerase IA Not tested PPHGI-1 Protein 0.0 63
topB1 YP_005176228.1 DNA topoisomerase III Not tested ICEPmu1 Protein 5e-150 50
topB NP_458624.1 topoisomerase B Not tested SPI-7 Protein 3e-150 49
topB NP_807836.1 DNA topoisomerase III Not tested SPI-7 Protein 3e-150 49
topB AAF14809.1 topoisomerase B Not tested SPI-7 Protein 3e-150 49
PMI2630 YP_002152332.1 DNA topoisomerase III Not tested Not named Protein 6e-149 49
topB AAW83109.1 TopB Not tested GGI Protein 2e-118 43