Gene Information

Name : PputGB1_3224 (PputGB1_3224)
Accession : YP_001669452.1
Strain : Pseudomonas putida GB-1
Genome accession: NC_010322
Putative virulence/resistance : Virulence
Product : type VI secretion protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 3612561 - 3613064 bp
Length : 504 bp
Strand : +
Note : TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: plu:plu0372 hypothetical protein

DNA sequence : 
ATGTCTAGAAGCACGGGATCTGTCGCACCAAAAGAGCGCGTCAATATCAAGTATGTCCCCGCCACGAGCGATATGCAGGC
TGAGGTGGAGTTACCTCACAAAATGCTGGTTCTGGGAGACTTCGGCCTGAATGACAACCGTGCGCTTGAGGACCGTCAGG
CCATGCGCATCGATAAACACACATTCAACAGCGTGTTGAGCGACGCCAACGTGAGCCTGGACGTGTCTGTGCCGTCCATG
CTCGGCACAACCCCGGACGCCGACCTGGGGGTTCACCTGCAATTCAAGTCCATCAACGATTTCGGGCCGGACCAAATCGC
ACGCCAGGTACCCGAGCTGAACAAGCTGCTGGAACTGCGTGAAGCGCTGGTCGCCCTGAAGGGCCCATTGGGCAACGTCC
CCGTTTTTCGCAAGCAATTGCAGCACCTGCTGAACAACGAGCAGGCACGTAAACAGCTTGCCCAAGAACTGAACCTGGTA
CTTGAAGCACCAGAAAATGACTGA

Protein sequence : 
MSRSTGSVAPKERVNIKYVPATSDMQAEVELPHKMLVLGDFGLNDNRALEDRQAMRIDKHTFNSVLSDANVSLDVSVPSM
LGTTPDADLGVHLQFKSINDFGPDQIARQVPELNKLLELREALVALKGPLGNVPVFRKQLQHLLNNEQARKQLAQELNLV
LEAPEND

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec17 YP_851427.1 hypothetical protein Not tested PAI II APEC-O1 Protein 6e-37 48
aec17 AAQ96711.1 Aec17 Not tested AGI-1 Protein 4e-37 48
HH0248 NP_859779.1 hypothetical protein Not tested HHGI1 Protein 6e-33 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputGB1_3224 YP_001669452.1 type VI secretion protein VFG2092 Protein 7e-43 56
PputGB1_3224 YP_001669452.1 type VI secretion protein VFG2474 Protein 4e-35 51