|
Name : PputGB1_2769 (PputGB1_2769) Accession : YP_001668999.1 Strain : Pseudomonas putida GB-1 Genome accession: NC_010322 Putative virulence/resistance : Virulence Product : type VI secretion ATPase Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 3105940 - 3108537 bp Length : 2598 bp Strand : + Note : KEGG: psp:PSPPH_0129 ATP-dependent Clp protease ATP-binding subunit; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domai DNA sequence : GTGAACCTGAAGTCTCTGTTCGCCAAGCTAAACGAAACCAGCCGCACGGCCACCGAAAGCGCGGCGGCCCTGTGCCTGTC GGAGCATCACTACGATGTCGAGGTTGAGCACCTGCTGCTGCAACTGCTCGACAGCAGTGACAATGACCTGGCACCGATCC TGCGCCACTATGAGGTCGTCACCGAGCGCCTGCAGGCGCAACTGGTCACCGCCCTGGGCACCTTCAAGAAAGGCAATACC CGTACCCCAGCGCTGTCGCCGCACATCACCCGCATGATCGAGCAGGCCTGGTTGCTGGCATCGATCGAGTATGGCGTTGG CCAAGTACGCAGCGGCCACTTGCTGCAAGCCCTGCTTGATGATGCCGAACTGCGCCGAGTGGTGATGGCTTCGGCACCGG AGCTGGAAAAGATCAATGCCAATGACCTGCGCCTGAACCTTGCCGCACTGGTCGAAGGTAGCGCCGAGTCGCGGCAGGCC AGCCCCCTGGCCAGCCCCGCAGCACCGATTGCCAGCAGCACTAAAGCTGGGGGCAAGACCCCAGCGCTGGACCAGTACAC CGTCAACCTTACCCAAAGTGCCCGCGAAGGCCGCATTGACCCAGTCCTGGGCCGCGAGTTCGAAGTGCGGCAAATGGTCG ACATCCTCACCCGTCGCCGGCAAAACAACCCGATTCTCACCGGTGAAGCCGGGGTCGGCAAAACCGCCGTGGTCGAGGGC CTGGCCCTGAGAATCGCCCAGGGCGATGTACCAGCGGTGCTCAAGGATGTGGCCCTGCACACCCTTGACCTGGGCCTGCT GCAGGCGGGCGCCGGGGTAAAGGGCGAGTTCGAAAACCGCCTGAAAGCGGTCATCGAAGAGGTCAAGCGCAGCCTGCACC CAATCATCCTGTTCATCGACGAAGCCCACACCCTGATCGGTTCTGGCGGCCAGGCCGGGCAGAACGATGCCGCCAACCTG CTCAAGCCGGCCCTTGCCCGTGGCGAACTGCGCACCATCGCCGCCACCACCTGGGCCGAATACAAGAAGTACTTCGAGAA AGACGCCGCCCTCGCCCGCCGCTTTCAGGTAGTAAAGGTCGAAGAACCTGATGAAGACAAAGCCATTCACATGCTGCGCG GGCTACTGGGCAAGATGCGCGAGCACCACAAGGTGGCGGTGATGGACGAAGCGCTGGTACAAGCGGTGCGCCTGTCCAAC CGCTACATCACCGGCCGCCAGCTGCCCGACAAAGCCGTTAGCGTGCTCGACACCGCCTGCGCCCGCATCGCCCTGGCGCA GTCGTCGCAGCCAGGCTTGCTGGAAGACTGCCGTCGGCAGATCGACAACCTGCAGGCAGAAATCGCCGTTCTTGGCCACG AAGCGGGCAAAGGCCATGACCATGCCCGTCGCCTAGGCGAGCTGCAGGCCGCGTTGCAGACCGAACAGCAGCGCGAGCAG CAGCTCATCGCGCAGTGGCAACAGGAGCTGGAACTGGTCGAGCAACTCAAGGCACTGGATGCCGCCAACGACACCGACGC CGAGCAGCTCAATACCCTGCGCGCCGAACTGGCCCGTGTGCAAGGTGACCAGCCACTGGTCCACGCCCTGGTCGACAGCG GCGCCATTGCCCAGGTCATCAGCGGCTGGACCGGCATCCCGCTGGGCAAGATGCTGCGCGACGAAATCGATACCGTACAG CGCCTGCCGGCCCTGCTGGGCGAGCGCGTACTGGGCCAGGACCATGCCCTGCAGGAAATCGGCAAACGCATCAAGATTTC CCGTGCGCGCATGGAAGACCCCAACAAACCCATCGGCGTGTTCCTGCTGCTCGGCCCCAGCGGCGTCGGCAAGACCGAAA CTGCCCTGGCCCTGGCCGATACGCTGTACGGCGGCGAGCGCAACCTGATCACCATCAACATGTCCGAGTACCAGGAGGCC CACACCGTGTCGAGCCTCAAAGGCTCGCCCCCCGGCTACGTCGGTTACGGCGAAGGCGGCGTGCTGACCGAGGCGGTACG CCGCAAACCCTACAGCGTGGTGCTGCTGGACGAGGTGGAAAAAGCCCACCCCGACGTACTCGAACTGTTTTTCCAGGTCT TCGACAAGGGCGTGCTGGACGACGGTGAAGGCCGCGAGATCAACTTCCGCAACACAGTGATCATCCTCACCTCCAACACC GGCACCGAACGCATCATGCAAACCTGCCTGAATGCCACCGAGCTGCCAACGCCAGAGGCCATCGTCGAAGGCCTGCGCAA CGAGCTCAACCAAGTGTTCAAGCCGGCGTTTCTCGGCCGCCTGAACATCGTGCCGTTCTACCCGGTGCAGGACCAGATCC TCGAGCGCATCGTCGCCCTCAAGCTCGAGCGTATCGCCAAGCGCTTCGCCCGCAACCACCAGGCCGAGTTGGGCTACGAC GAGGCGCTGGTCAAAGCCATCGCCGCCCGTTGCACCGAGGTCGACAGCGGCGCACGCAACATCGACAACATCCTGTCGCA AACCCTGATGCCCGAGCTCGCCCAGCGTGTGCTCGAACGCATGGCCCAGGACACACCGATCGAGCGCCTTGTGATCGAAC TGGGCAGCGATGGCGATTTCGCCTATCGCCTGGCCTGA Protein sequence : MNLKSLFAKLNETSRTATESAAALCLSEHHYDVEVEHLLLQLLDSSDNDLAPILRHYEVVTERLQAQLVTALGTFKKGNT RTPALSPHITRMIEQAWLLASIEYGVGQVRSGHLLQALLDDAELRRVVMASAPELEKINANDLRLNLAALVEGSAESRQA SPLASPAAPIASSTKAGGKTPALDQYTVNLTQSAREGRIDPVLGREFEVRQMVDILTRRRQNNPILTGEAGVGKTAVVEG LALRIAQGDVPAVLKDVALHTLDLGLLQAGAGVKGEFENRLKAVIEEVKRSLHPIILFIDEAHTLIGSGGQAGQNDAANL LKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVVKVEEPDEDKAIHMLRGLLGKMREHHKVAVMDEALVQAVRLSN RYITGRQLPDKAVSVLDTACARIALAQSSQPGLLEDCRRQIDNLQAEIAVLGHEAGKGHDHARRLGELQAALQTEQQREQ QLIAQWQQELELVEQLKALDAANDTDAEQLNTLRAELARVQGDQPLVHALVDSGAIAQVISGWTGIPLGKMLRDEIDTVQ RLPALLGERVLGQDHALQEIGKRIKISRARMEDPNKPIGVFLLLGPSGVGKTETALALADTLYGGERNLITINMSEYQEA HTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLDDGEGREINFRNTVIILTSNT GTERIMQTCLNATELPTPEAIVEGLRNELNQVFKPAFLGRLNIVPFYPVQDQILERIVALKLERIAKRFARNHQAELGYD EALVKAIAARCTEVDSGARNIDNILSQTLMPELAQRVLERMAQDTPIERLVIELGSDGDFAYRLA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 9e-166 | 48 |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 8e-101 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PputGB1_2769 | YP_001668999.1 | type VI secretion ATPase | VFG2076 | Protein | 0.0 | 51 |
| PputGB1_2769 | YP_001668999.1 | type VI secretion ATPase | VFG2084 | Protein | 1e-152 | 46 |
| PputGB1_2769 | YP_001668999.1 | type VI secretion ATPase | VFG0079 | Protein | 3e-110 | 42 |
