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Name : PputGB1_2454 (PputGB1_2454) Accession : YP_001668689.1 Strain : Pseudomonas putida GB-1 Genome accession: NC_010322 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 2748337 - 2750010 bp Length : 1674 bp Strand : + Note : PFAM: type II secretion system protein E; KEGG: pen:PSEEN2848 type II secretion system protein E DNA sequence : ATGTCAGAAGCATTCGATGCAGCAGTCTCAGCCTACCCCCGCGACCTGCTGGCCCAAGCCCGGCTGCAAGCCAGTGATGA GCGCCTGCTCAACTGCCTGGAACGCCTGGCCTGCGACACCCCCGACACCTTCACCCGCCGCCTGGGCCTGACCCTGTACT ACCCGGTACTGGACAGCCACACCCTGCTGGCCAGCACCCCACGCTTCGACAAGGTGTCCTTGGCCCAGTGCCTGAAGCGC GAATTCGTGCTGATCGAGCAAAACGGCCAGTTGCTGGGCGTGTTCGCCGACCCCTTCGACCACACCCGCCTGGCCTGGAT CGACGACGTGCTGCAAGGCGCGCCGCTGTACCTGGCCCACGCCGCCGAACTGGCCACCTTTCTGGCCCGGCACGAAGAAA GCTTCCATGCAGTCGATGCCCTGGACCACGACCCCGAGGCCAGCAGCGAAAGCGACCCGCTGCAACGCCTGTCACTGGCC AGTATCAGCGAAGACCAAAGCCGCGTGGTCAAACTGGTCAACTCCACCCTGTACGATGCGCTCAAGCTGCACGCCAGCGA CATCCACCTGGGCATGACCGGCCAGGGCCTGACCATCAAGTACCGTATCGACGGCGTGCTCAACGGTGCCGGCAAAGCCA GCGGCAGCGCCTTTGCCGACCAGGTGATTTCGCGGATCAAGGTCATGGCCGAGCTGGACATCGGCGAAAAGCGCGTGCCC CAGGACGGGCGCTTCAAGGTCGCCGTGGGCGATCGGCAAATCGACTTTCGGGTGTCGATCATGCCCAGCATCTTCGGTGA GGACGCCGTACTGCGGGTGCTCGACAAGCAGGACTTGTCCGACCGGGTCAGCGGCGTGCAGTTGCAAGCCCTGGGCTTTG CCGACGAAACCCTGCGCGCCCTGCGCCGGCTGGCCGCCGAACCTTACGGCATGATCCTGGTGACCGGCCCCACCGGCAGC GGCAAGACCACCACCCTGTACGCCATGATCAGCGAGATCAACCACGGCGTGGACAAGATCATCACCATCGAAGACCCGGT CGAGTACCAACTGCCCGGCGTGCTGCAGATCCCGGTCAACGAGAAGAAGGGCCTGACCTTCGCCCGTGGCCTGCGCTCGA TCCTGCGCCATGACCCGGACAAGATCCTGGTTGGCGAAATCCGCGACCCCGACACCGCCCAGATTGCCGTGCAGTCGGCG CTCACCGGCCACCTGGTGTTCACCACCATCCACGCCAACAACGTATTCGACGTGATCGGCCGCTTCAGCCAGATGCAGGT CGACCCCTACAGCTTCGTTTCCGCGCTCAATGCAGTGCTGGCCCAGCGCTTGATTCGCCTGGCCTGCCCGCACTGCGCCA CGGCCTGCGAACACGATGACGACACCCTGTATGGCTCGGGCCTGACCCGCGAGGCCGTAGCCGGTTGGACCTTCGTGCGC GCCCAGGGCTGCGGCCAATGCCGGGGCAGTGGCTACCGCGGCCGCAGCGCCATTGCCGAACTGCTGCACCTGGACGACGA CCTGCGGCAAATGATCGTGGAGCGCCGCCCCCTGGCGCAAATCAAGACGCTTGCCTGCCAGCGCGGCCTGCGCCTGCTGC GGGCCTCGGCCCTGGACCTGGTCCGCGATGGCCGTACCACCCTTGAGGAGATCAACCGTGTCACATTCATCTGA Protein sequence : MSEAFDAAVSAYPRDLLAQARLQASDERLLNCLERLACDTPDTFTRRLGLTLYYPVLDSHTLLASTPRFDKVSLAQCLKR EFVLIEQNGQLLGVFADPFDHTRLAWIDDVLQGAPLYLAHAAELATFLARHEESFHAVDALDHDPEASSESDPLQRLSLA SISEDQSRVVKLVNSTLYDALKLHASDIHLGMTGQGLTIKYRIDGVLNGAGKASGSAFADQVISRIKVMAELDIGEKRVP QDGRFKVAVGDRQIDFRVSIMPSIFGEDAVLRVLDKQDLSDRVSGVQLQALGFADETLRALRRLAAEPYGMILVTGPTGS GKTTTLYAMISEINHGVDKIITIEDPVEYQLPGVLQIPVNEKKGLTFARGLRSILRHDPDKILVGEIRDPDTAQIAVQSA LTGHLVFTTIHANNVFDVIGRFSQMQVDPYSFVSALNAVLAQRLIRLACPHCATACEHDDDTLYGSGLTREAVAGWTFVR AQGCGQCRGSGYRGRSAIAELLHLDDDLRQMIVERRPLAQIKTLACQRGLRLLRASALDLVRDGRTTLEEINRVTFI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 3e-75 | 45 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-75 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PputGB1_2454 | YP_001668689.1 | type II secretion system protein E | VFG2048 | Protein | 7e-77 | 45 |
| PputGB1_2454 | YP_001668689.1 | type II secretion system protein E | VFG0182 | Protein | 6e-75 | 45 |
| PputGB1_2454 | YP_001668689.1 | type II secretion system protein E | VFG2426 | Protein | 2e-69 | 41 |
| PputGB1_2454 | YP_001668689.1 | type II secretion system protein E | VFG1880 | Protein | 6e-66 | 41 |
