Gene Information

Name : PputGB1_1379 (PputGB1_1379)
Accession : YP_001667622.1
Strain : Pseudomonas putida GB-1
Genome accession: NC_010322
Putative virulence/resistance : Virulence
Product : polysaccharide biosynthesis protein CapD
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1086
EC number : -
Position : 1541616 - 1543643 bp
Length : 2028 bp
Strand : +
Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pen:PSEEN1506 dTDP-

DNA sequence : 
ATGACAATCAGAAGAAAACTCTGGGAGCCTATGGACAAAGTACGCAAAAAACTGCTCGGGTTACCGCGTAGACAAAAGCG
TCTGTTGCAGGTGCTGACAGATGTAGTGCTGGTGTGGTTCGCACTGTGGATGGCGTTCGTGGTGCGTTTGGGCATCGACG
ATATGGCCAACCCGTTGATTGACCATACTTGGCTGTTCCTGTGCGCGCCTGTGGTTTCCATTCCCCTGTTCATCCGCTTT
GGTTTGTATCGCGCCGTCATGCGCTACTTTGGCAATGATGCGCTGATTGCCATCATCAAGGCCGTGACGCTGTCCGCGCT
GATTCTGGGGTTCATCATTTATTGGGCAAGCAATCACCAGAACGTCGTGCCTCGCTCGATCACCTTCAACTACTGGTGGC
TGAGCCTGATCATGATTGGCGGGTTGCGCCTGGCCATGCGTCAGTATTTTCTGGGTGACTGGTTTGCCGCGGCTGCACAG
CATGTGCCTTTCGCCCAGCGTGACGACGGGCTGCCCAAGGTCGCCATCTACGGCGCTGGTGCTGCCGGTAACCAACTGGT
TGCCGCCTTGCGCATGGACCGGGCCATGCGCCCGGTGGCATTCATCGATGACGATGCCAGCATCAGTGACCGCGTGATTG
CCGGGCTGCAGGTTTACCGCCCGGAACAACTTGACCAGATGATCAACGTGACGGGCGCACAGGAAATTCTGCTGGCGATC
CCTTCATCGACGCGCACCCGTCGCAGGGAGATTCTCAACTTCCTCGAAGGCTTCCCGCTGCACGTTCGCAGTGTGCCGGG
CATCATGGACCTGGCCAGCGGCCGAGTGAAAGTCGATGATATCCAAGAGGTCGACATTGGCGACTTGCTGGGGCGCGATA
CGGTGCCTGCCCAGCCAGACCTCCTTGAGCGCTGCATCACCGAACAAACGGTGCTGGTGACCGGGGCTGGCGGTTCTATT
GGTTCAGAGCTTTGCCGGCAAATACTGGGGCAGGCTCCCAAGTACTTGCTGCTGTTCGATCACAGCGAGTTCAACCTCTA
CAGCATTCTCTCCGAGCTGGAACAGCGTGTTTCGCGGGAGTCTTTGACTGTAAGCCTGGTGCCTATTCTGGGGTCGGTCC
GCAACCAATCTCAGTTGCTGGACATCATGAAAACCTGGCGGGTCGACACCGTCTACCACGCCGCCGCCTACAAGCACGTG
CCGATGGTTGAGCACAACATCACCGAAGGCCTGATGAACAATGTCATCGGCACCTTGCACACCGCCCAGGCCGCGCTGCA
GGCCGGGGTTGCCAACTTCGTGCTGATTTCCACCGACAAGGCCGTGCGTCCGACCAACGTGATGGGGAGCACCAAGCGCC
TGGCCGAAATGACGCTGCAGGCACTCAGCCGTGAAGTAGCACCAGTGCTGTTTGGTGACAGCGGCAAAGTCTCGCAGGTA
AACAAGACTCGCTTCACCATGGTGCGCTTCGGCAACGTGCTGGGCTCGTCGGGCTCGGTGATTCCGCTGTTCCACAAACA
GATCAAGGCGGGCGGCCCGCTGACCGTCACCCACCCAAAGATCACCCGTTACTTCATGACCATTCCCGAGGCTGCGCAGC
TGGTAATTCAGGCCGGCTCCATGGGCAAGGGCGGCGATGTGTTCGTGCTGGACATGGGCGAGCCGGTGAAGATTGTGGAG
CTGGCCGAGAAGATGATTCACCTGTCAGGCTTCAGTGTGCGCTCCGAACGTAACCCCATGGGCGATATTTCCATCCAGTT
CACCGGGTTGCGGCCGGGAGAAAAGCTGTATGAAGAGCTGCTGATCGGCGACAATGTGATTGCCACTCGCCACCCTATGA
TCATGAGTGCCAACGAGGACTTCATGGCCTGGGACACGCTCAAGGAGTCCCTGCGGCAACTGATGGCGGCAGCCGCGGCT
GATGATTTTGTGCGAGTTCGGCAGTTGCTGCGTGAAACCGTGAGCGGCTATTCGCCAGAAGGCGAGATTGTCGACTGGAT
CTACCAGCAGCGCCGTCTGGAACCCTGA

Protein sequence : 
MTIRRKLWEPMDKVRKKLLGLPRRQKRLLQVLTDVVLVWFALWMAFVVRLGIDDMANPLIDHTWLFLCAPVVSIPLFIRF
GLYRAVMRYFGNDALIAIIKAVTLSALILGFIIYWASNHQNVVPRSITFNYWWLSLIMIGGLRLAMRQYFLGDWFAAAAQ
HVPFAQRDDGLPKVAIYGAGAAGNQLVAALRMDRAMRPVAFIDDDASISDRVIAGLQVYRPEQLDQMINVTGAQEILLAI
PSSTRTRRREILNFLEGFPLHVRSVPGIMDLASGRVKVDDIQEVDIGDLLGRDTVPAQPDLLERCITEQTVLVTGAGGSI
GSELCRQILGQAPKYLLLFDHSEFNLYSILSELEQRVSRESLTVSLVPILGSVRNQSQLLDIMKTWRVDTVYHAAAYKHV
PMVEHNITEGLMNNVIGTLHTAQAALQAGVANFVLISTDKAVRPTNVMGSTKRLAEMTLQALSREVAPVLFGDSGKVSQV
NKTRFTMVRFGNVLGSSGSVIPLFHKQIKAGGPLTVTHPKITRYFMTIPEAAQLVIQAGSMGKGGDVFVLDMGEPVKIVE
LAEKMIHLSGFSVRSERNPMGDISIQFTGLRPGEKLYEELLIGDNVIATRHPMIMSANEDFMAWDTLKESLRQLMAAAAA
DDFVRVRQLLRETVSGYSPEGEIVDWIYQQRRLEP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1D AAA64643.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 2e-80 43
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 5e-78 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputGB1_1379 YP_001667622.1 polysaccharide biosynthesis protein CapD VFG0029 Protein 1e-120 45
PputGB1_1379 YP_001667622.1 polysaccharide biosynthesis protein CapD VFG1300 Protein 1e-77 44