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Name : xerD (PputGB1_1073) Accession : YP_001667317.1 Strain : Pseudomonas putida GB-1 Genome accession: NC_010322 Putative virulence/resistance : Unknown Product : site-specific tyrosine recombinase XerD Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4974 EC number : - Position : 1219642 - 1220538 bp Length : 897 bp Strand : + Note : site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d DNA sequence : ATGCCCGCCCTCGATCACCCCCTGATAGACCAGTTTCTCGACGCCCTGTGGCTTGAAAAAGGCCTGTCCGACAACACCCG AGTGTCCTACCGCAGTGACCTGGCCTTGTTCAATGGCTGGCTGCAGGAGCAGGCAGTGTCGCTGCCGGATGCCGGCCGCG AGCTGATCCTCGATCACCTGGCCTGGCGCCTCGACCAAGGCTACAAGCCGCGCTCCACGGCGCGCTTCCTGTCCGGCCTG CGTGGTTTTTTCCGCTACCTGCTGCGGGAAAGGCTGGTGGCCATCGACCCGACCTTGCAGGTCGACATGCCACAACTGGG CAAACCACTGCCCAAGTCACTCTCCGAAGCCGATGTCGAAGCCCTGCTGCAGGCACCGGACCTGGGCGAAGCCATCGGCC AGCGCGACCGTGCCATGCTCGAAGTGCTCTATGCCTGCGGCCTGCGCGTCACCGAGCTGGTCAGCCTGACCCTCGACCAG GTCAACCTGCGCCAGGGTGTGCTGCGGGTAATGGGCAAGGGCAGCAAGGAGCGCCTGGTGCCCATGGGTGAAGAGGCGGT GGTGTGGCTGGAACGCTACCAGCGCGATGGCCGCGCCGAACTGCTCAACGGCCGCCCCAGCGACGTGCTGTTCCCCAGCC TGAGAGGCGAGCAGATGACTCGCCAGACCTTCTGGCACCGCATCAAGCATCATGCCCGGGTTGCTGGCATCGACAAGCCG CTGTCGCCGCACACCTTGCGGCATGCCTTCGCCACCCACCTGCTCAACCACGGTGCCGACTTGCGTGTGGTGCAGATGCT GCTGGGCCACAGCGACCTGTCGACCACGCAGATCTATACCCACGTCGCCAAGGCCCGCCTGCAGCAGTTGCACGCCCAGC ACCACCCGCGTGGATGA Protein sequence : MPALDHPLIDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQEQAVSLPDAGRELILDHLAWRLDQGYKPRSTARFLSGL RGFFRYLLRERLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQ VNLRQGVLRVMGKGSKERLVPMGEEAVVWLERYQRDGRAELLNGRPSDVLFPSLRGEQMTRQTFWHRIKHHARVAGIDKP LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPRG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00307 | YP_008207772.1 | Site-specific recombinase XerD | Not tested | AbaR25 | Protein | 8e-66 | 61 |
| BJAB0868_00311 | YP_008211637.1 | Site-specific recombinase XerD | Not tested | AbaR26 | Protein | 8e-66 | 61 |
