|
Name : lysS (Teth39_0318) Accession : YP_001664323.1 Strain : Thermoanaerobacter pseudethanolicus ATCC 33223 Genome accession: NC_010321 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 358226 - 359725 bp Length : 1500 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCTAATTCAAATGATAACATTTGGAACAACACTGAAGAACTCAATGAACTTTTGCGAATAAGAAGAGAAAAATTAAA TATTTTAAGAAGCATGGGAATAGAACCTTACGGTATTGACAGGTTTGAAAGGACTAATTTGTCCTCTGATATTAAAAACG ATTACGAGAATTTTGAAGGCAAAGTGGTTACTTTAGCAGGCAGAATTATGTCTAAAAGGAGCCATGGAAAAGCTTCTTTT GCTGATATTCAAGACAGAGATGGAAGAATCCAGATTTATGTCAAGTATGACACAGTAGGGGAAAAGAACTACGAAATTTT TAAAATCTTAGATATTGGAGATATAATAGGTGTTACAGGAGAGGTTTTTAAATCTAAAACTGGAGAAATAACTATTCGCG TGACAGATTTTAAACTTTTGTCTAAGTCTCTTCAAATACTGCCAGAAAAATGGCATGGTTTAAAAGACCCTGATTTGCGT TATCGGCAGAGATATACAGATTTAATAATAAATCCCGAAGTAAAAGAGGTGTTTTTAAAGAGGACGAAAATAATAAAGGC GATAAGAGAGTTTCTTGACAATAGAGGATTTTTAGAGGTGGAGACTCCTATTCTTCATACTATTGCGGGTGGGGCTGCAG CAAGGCCTTTTATTACTCATCACAATGCTTTAGACATTGATATGTACTTGCGAATTGCTTTAGAGCTTCATTTAAAAAGA CTTATTGTGGGTGGACTTGAAAAAGTATATGAAATGGGCAGAGTTTTTAGAAATGAAGGAATGGATATAAGGCACAATCC GGAATTTACTCTTTTAGAGCTTTATGAAGCCTATACTGATTATTACGGTATGATGGAACTTACAGAACAATTATTCGCCT ATGTGGCCCAAAAGGTTAATGGTATTACGAAAATAGTTTATCAAGGGACAGAAATAGATTTGACACCTCCTTGGAAGAGA ATTACTATGGTGGATGCGATAAAAGAATATGTAGGGGTAGACTTTAATGAAGTGAAGACAGATGAAGAGGCAATAGAGAT AGCGAAGAAATTAAACCTTGAGACAAAAGAAGGAATGAAAAAGGGAGAAGTAATAGCACTTGTTTTTGACGAGCTAGTAG AACAGCATTTGATACAGCCAACTTTTGTTATGGATTATCCTGTAGAGATTTCTCCTTTAGCTAAGAGAAAACATGACAAT CCAGCATTTACTTCTAGATTTGAAGCTTTTATTTACGGAAGAGAAGTGGCTAATGCCTTTTCAGAATTAAATGACCCTAT AGACCAAAAAGAAAGGTTTTTAGAACAATTAAAACAAAGAGAAGCCGGCGACGAAGAAGCTCATATGATGGATGAGGATT TTATAAATGCTCTTGAGGTTGGTATGCCACCGACTGGAGGACTAGGTATAGGGGTAGACAGACTTGTGATGTTTATGACA GATGCTTATTCTATAAGAGATGTAATATTATTCCCGACGATGAAGCCTAAAAATGACTAA Protein sequence : MSNSNDNIWNNTEELNELLRIRREKLNILRSMGIEPYGIDRFERTNLSSDIKNDYENFEGKVVTLAGRIMSKRSHGKASF ADIQDRDGRIQIYVKYDTVGEKNYEIFKILDIGDIIGVTGEVFKSKTGEITIRVTDFKLLSKSLQILPEKWHGLKDPDLR YRQRYTDLIINPEVKEVFLKRTKIIKAIREFLDNRGFLEVETPILHTIAGGAAARPFITHHNALDIDMYLRIALELHLKR LIVGGLEKVYEMGRVFRNEGMDIRHNPEFTLLELYEAYTDYYGMMELTEQLFAYVAQKVNGITKIVYQGTEIDLTPPWKR ITMVDAIKEYVGVDFNEVKTDEEAIEIAKKLNLETKEGMKKGEVIALVFDELVEQHLIQPTFVMDYPVEISPLAKRKHDN PAFTSRFEAFIYGREVANAFSELNDPIDQKERFLEQLKQREAGDEEAHMMDEDFINALEVGMPPTGGLGIGVDRLVMFMT DAYSIRDVILFPTMKPKND |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-112 | 52 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 8e-84 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001664323.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-112 | 52 |
