|
Name : lysS (Teth514_0810) Accession : YP_001662449.1 Strain : Thermoanaerobacter sp. X514 Genome accession: NC_010320 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 842540 - 844039 bp Length : 1500 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCTAATTCAAATGATAACATTTGGAACAACACTGAAGAACTCAATGAACTTTTGCGAATAAGAAGAGAAAAATTAAA TATTTTAAGAAGCATGGGAATAGAACCTTACGGTATTGACAGGTTTGAAAGGACTAATGTATCCTCTGATATTAAAAACG ATTACGAGAATTTTGAAGGCAAAGTAGTGACTCTTGCAGGACGAATTATGTCCAAAAGGGCCCATGGCAAAGCTTCTTTT GCAGATATTCAAGATAGAGATGGCAGGATACAGATTTACGTTAAGTATGATACAGTAGGAGAGAAGAATTATGAAATTTT TAAAATCCTCGACATTGGAGATATAATAGGGGTTACAGGCGAGGTATTTAAATCTAAAACTGGTGAAATAACTATTCGCG TAACAGACTTTAAGCTTTTGTCTAAATCTCTTCAAATACTTCCAGAGAAATGGCACGGTTTAAAAGACCCTGATTTGCGT TATAGACAGAGATATACGGATTTAATAATAAATCCCGAAGTAAAAGAGGTGTTTTTAAAGAGGACGAAAATAATAAAGGC GATAAGAGAATTTCTTGACAATAGAGGATTTTTAGAAGTGGAGACTCCTATTCTTCATACTATTGCGGGTGGGGCTGCAG CAAGGCCTTTTATTACTCATCACAATGCTTTAGACATTGATATGTACTTGCGAATTGCTTTAGAGCTTCACTTAAAAAGA CTTATTGTCGGTGGCCTGGAAAAAGTATATGAAATGGGCAGAGTTTTTAGAAATGAAGGAATGGATATAAGGCACAATCC GGAATTTACTTTGTTGGAACTTTACGAAGCCTATACGGATTATTACGGTATGATGGAACTTACAGAACAATTATTTGCCT ATGTGGCCCAAAAGGTTAACGGTACTACGAAAATAGTTTATCAAGGAACAGAAATAGATTTGACACCTCCTTGGAAGAGA ATTACTATGGTGGATGCAATAAAAGAATATGTAGGTGTAGACTTTAATGAAGTTAAGGCAGATGCAGAAGCAGTAGAGAT AGCGAAGAGATTAAACCTTGAGACAAAAGAAGGAATGAAAAAGGGAGAAGTAATAGCACTTGTTTTTGATGAGCTGGTAG AACAACATTTGATACAGCCAACTTTTGTTATGGATTATCCAGTAGAGATTTCTCCTTTAGCTAAGAGAAAACACGACAAT CCAGCATTTACTTCTAGATTTGAAGCCTTTATTTACGGAAGAGAAGTGGCTAATGCCTTTTCAGAATTAAATGACCCTAT AGACCAAAAAGAAAGGTTTTTAGAACAATTAAAACAAAGAGAAGCCGGCGACGAAGAAGCTCATATGATGGATGAGGATT TTATAAATGCTCTTGAGGTTGGTATGCCACCGACTGGAGGACTAGGTATAGGGGTAGACAGACTTGTGATGTTTATGACA GATGCTTATTCTATAAGAGATGTAATATTATTCCCGACGATGAAGCCTAAAAATGACTAA Protein sequence : MSNSNDNIWNNTEELNELLRIRREKLNILRSMGIEPYGIDRFERTNVSSDIKNDYENFEGKVVTLAGRIMSKRAHGKASF ADIQDRDGRIQIYVKYDTVGEKNYEIFKILDIGDIIGVTGEVFKSKTGEITIRVTDFKLLSKSLQILPEKWHGLKDPDLR YRQRYTDLIINPEVKEVFLKRTKIIKAIREFLDNRGFLEVETPILHTIAGGAAARPFITHHNALDIDMYLRIALELHLKR LIVGGLEKVYEMGRVFRNEGMDIRHNPEFTLLELYEAYTDYYGMMELTEQLFAYVAQKVNGTTKIVYQGTEIDLTPPWKR ITMVDAIKEYVGVDFNEVKADAEAVEIAKRLNLETKEGMKKGEVIALVFDELVEQHLIQPTFVMDYPVEISPLAKRKHDN PAFTSRFEAFIYGREVANAFSELNDPIDQKERFLEQLKQREAGDEEAHMMDEDFINALEVGMPPTGGLGIGVDRLVMFMT DAYSIRDVILFPTMKPKND |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-112 | 50 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 6e-84 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001662449.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-112 | 50 |
