Gene Information

Name : phyB (APJL_1728)
Accession : YP_001652724.1
Strain : Actinobacillus pleuropneumoniae JL03
Genome accession: NC_010278
Putative virulence/resistance : Virulence
Product : PhyB, capsule biosynthetic locus protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG3562
EC number : -
Position : 1888000 - 1889220 bp
Length : 1221 bp
Strand : +
Note : -

DNA sequence : 
ATGATTAGTCATTATTTGGATGATTTGATTGAAAATGCGGATCGAATCCTGTTATTACAAGGTCCGATAGGCTCTTTTTT
TACCGATCTGTCGGAATGGTTACGTACTCAAAATAAAACGGTATTTAAAATCAATTTAAATGCCGGTGATGAATATTTTT
ACCCGAATAGCGTTTTAAATACGTTTGCTTATCGCGATAGCCTAGAAAACTTTCATCATTATCTAGTGAGTTTTTGTCAA
ACTCATCATATTGATCAGGTGATTTGTTTCGGCGATAACCGTAAGTACCATAAAATTGCAAAAAAAGTATGTCAATCTTT
ATCCGTTGGTTTCTGGGCGTTTGAAGAGGGATATTTCCGTCCTAATTACGTTACTTTTGAAAAAAGCGGGGTAAACGCCT
ATTCGCCGATTCCATGTGATGCAACGTATTTCTCTCAATTTGAGAACTTACCCGAGCCGGCAAAACCGCAGCATGTCGCA
AAAGGCTTTTGTCCGATGGCGAAATTGGCGATTCAATATTACGTTTCCGCTTATTATCGTCGTCACCATTATCCTAAATA
TTGCCATCATCGTTTATTAAATGTCTTATATTATGTGAAATTATGGTCGATATCCGGAGTGAAACGTTTTCACTATTATC
TATATGATTGGAATTTTGCAAAACGAGTAGAAAAAGGGGAATTCGGCGATTTCTTTATTTTGCCTTTACAGGTTTATGAC
GATAGCCAAATTCTGGTTCACAGCGATTATTCGAGCGTAGAGGCGATTTTACGCGAAGTGTTATTATCTTTTGCGACGAA
AGCACCTAAGCACCTACGTTTGATCGTAAAACATCACCCGATGGACCGCGGCTTTATTGATTACGGTAAAGTGATTGACG
AATATCTGGAGCAATATCCCGAACTGAAAAAACGAATTTACTATATTCACGATGTACCGATGCCGGTTTTCTTACGTCAC
GGTAAAGGAATGGTCACGCTAAACAGTACCAGCGGTATTTCGGCGTTATTACACAATATGCCGGTGAAAACCTTAGGTCG
TGCCAATTATGATTTTGCCGGATTAACCTATCAAGGTAGCTTAGACGACTTTTGGAGCAATTCGGAAAAACCGGATGACG
GATTATTTAATGCCTACCGAAAATTCCATCTGCATAAAACGCATATTAACGGTAGCTTCTATAACAAAGTGATTTTGCGT
TATCCGTATAATCAAAGCTAA

Protein sequence : 
MISHYLDDLIENADRILLLQGPIGSFFTDLSEWLRTQNKTVFKINLNAGDEYFYPNSVLNTFAYRDSLENFHHYLVSFCQ
THHIDQVICFGDNRKYHKIAKKVCQSLSVGFWAFEEGYFRPNYVTFEKSGVNAYSPIPCDATYFSQFENLPEPAKPQHVA
KGFCPMAKLAIQYYVSAYYRRHHYPKYCHHRLLNVLYYVKLWSISGVKRFHYYLYDWNFAKRVEKGEFGDFFILPLQVYD
DSQILVHSDYSSVEAILREVLLSFATKAPKHLRLIVKHHPMDRGFIDYGKVIDEYLEQYPELKKRIYYIHDVPMPVFLRH
GKGMVTLNSTSGISALLHNMPVKTLGRANYDFAGLTYQGSLDDFWSNSEKPDDGLFNAYRKFHLHKTHINGSFYNKVILR
YPYNQS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lipB NP_273146.1 capsule polysaccharide modification protein Not tested IHT-A Protein 3e-106 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phyB YP_001652724.1 PhyB, capsule biosynthetic locus protein VFG0693 Protein 1e-130 65
phyB YP_001652724.1 PhyB, capsule biosynthetic locus protein VFG0705 Protein 1e-130 65
phyB YP_001652724.1 PhyB, capsule biosynthetic locus protein VFG0260 Protein 1e-106 53