Gene Information

Name : cpxD (APJL_1615)
Accession : YP_001652611.1
Strain : Actinobacillus pleuropneumoniae JL03
Genome accession: NC_010278
Putative virulence/resistance : Virulence
Product : HexD, capsule biosynthetic locus protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1596
EC number : -
Position : 1772285 - 1773472 bp
Length : 1188 bp
Strand : +
Note : -

DNA sequence : 
ATGGAAATTAAAAAATATAATTCAATCATAGGGTTAGCTTTAACAACATTGTTCCTTTCTGCTTGCTCAAGCCTCCCAAC
TTCAGGCCCTAGCCATAGTGCGATCTTAGAGGCTAATTCACAAAGTTCGGATAAACCCTTACCGGAAGTAAATGTGGTGG
AACTGGATAACGGTTTAGTTCAACAGTTGTATCAAACTCAGCAAAGCCAACAATTTTCCGGATTTTTAGGCACAGTAGGC
AGCGCGGGCTATGCCGGTGCGGTCAATGTGGGTGATGTACTTGAAATATCAATTTGGGAAGCTCCGCCGGCGGTGCTGTT
TGGCGGTACTTTTAGTTCTGAGGGACAAGGTAGCGGGCATTTAACGCAATTACCGGCACAAATGGTTAATCAAAACGGTA
CGGTTACCGTGCCGTTCGTGGGTAACATTCGTGTCGCAGGCAAAACACCGGAAGCGATTCAGTCTCAAATTATTGGAGCA
CTACAGCGCAAAGCGAATCATCCGCAAGCATTAGTCAAAATTGCGAATAATAACTCTGCTGATGTTACGGTTATTCGTCA
AGGCAATAGTATTCGTATGCCATTAACCGCTAATAATGAACGTGTATTAGATGCGGTTGCTGCAGTAGGCGGAACAACGG
AAAACATTGAAGATGTGACGGTCAAGCTAACCCGTGGTTCTGAAGTAAAAACACTCGCATTCGAAACGTTAATTTCCGAT
CCGGCACAAAATATTATGTTACGTGCTGGCGATGTTGTTTCGTTGCTAAACACGCCTTATAGTTTTACCGGTTTAGGCGC
TGTGGGTAACAACCAGCAAATGAAATTCTCAAGTAAAGGAATTACGCTTGCCGAAGCTATCGGTAAGATGGGCGGTTTAA
TTGATACTCGTTCGGATCCGAGAGGGGTTTTCGTATTCCGTCACGTGCCTTTTGCACAATTGAGTTTGGAACAACAAGCA
CAATGGCAAGCTAAAGGCTACGCTATAGGAATGGATGTACCAACGGTTTATCGTGTGAACTTACTTGAGCCGCAATCCAT
GTTTTTATTACAGCGTTTCCCAATGCAAGATAAAGATATTGTGTATGTTTCAAATGCGCCGTTGTCTGAATTCCAAAAAT
TCTTGAGAATGATTTTCTCAATTACTTCGCCGGTTACCAGTACGACCAATGCCGTTCGTGCCTATTAA

Protein sequence : 
MEIKKYNSIIGLALTTLFLSACSSLPTSGPSHSAILEANSQSSDKPLPEVNVVELDNGLVQQLYQTQQSQQFSGFLGTVG
SAGYAGAVNVGDVLEISIWEAPPAVLFGGTFSSEGQGSGHLTQLPAQMVNQNGTVTVPFVGNIRVAGKTPEAIQSQIIGA
LQRKANHPQALVKIANNNSADVTVIRQGNSIRMPLTANNERVLDAVAAVGGTTENIEDVTVKLTRGSEVKTLAFETLISD
PAQNIMLRAGDVVSLLNTPYSFTGLGAVGNNQQMKFSSKGITLAEAIGKMGGLIDTRSDPRGVFVFRHVPFAQLSLEQQA
QWQAKGYAIGMDVPTVYRVNLLEPQSMFLLQRFPMQDKDIVYVSNAPLSEFQKFLRMIFSITSPVTSTTNAVRAY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrA NP_273135.1 capsule polysaccharide export outer membrane protein Not tested IHT-A Protein 3e-93 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cpxD YP_001652611.1 HexD, capsule biosynthetic locus protein VFG0699 Protein 2e-139 80
cpxD YP_001652611.1 HexD, capsule biosynthetic locus protein VFG0687 Protein 2e-139 80
cpxD YP_001652611.1 HexD, capsule biosynthetic locus protein VFG0255 Protein 1e-93 53