Gene Information

Name : Mext_0427 (Mext_0427)
Accession : YP_001637920.1
Strain : Methylobacterium extorquens PA1
Genome accession: NC_010172
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : 3.1.1.3
Position : 471367 - 472128 bp
Length : 762 bp
Strand : +
Note : KEGG: nha:Nham_1390 flagellar biosynthetic protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein

DNA sequence : 
ATGACCCCCTCCCCCAGCCGGCCCGTGCCGCGATCCCTCCCCCTGACGCTTCTCCTGGCCGCGCTGCTGCTGGCGGCTGG
CGCGGGCGCGGCGTGGGCGCAGAGCGTCACCCTCGATCTCGGTGCGGGCGGCACGACGGAACGAGCGCTGCAGCTCGTCG
CGCTGATCACGGTCCTGGCGCTCGCGCCCTCCGTGCTGGTGATGGCGACCTCGTTCACCCGGATCGTCGTGGTGCTGTCG
ATCCTGCGCTCGGCGCTCGGCACGCAGACCGCGCCGCCCAACACGGTGATGGTGAGTCTGGCCCTGTTCCTGACCGCCTT
CGTGATGGCGCCGACGGCGCGGGAGGCCTACCGGACCGGCGTCGAGCCGCTGATGGCGGGCCAGATCAGCCAGTCCCAGG
CGTTCGAGCGGGCCTCGGCGCCGTTCAAGACCTTCATGTTGCGCAACGTGCGCGAGAAGGACCTCAAGCTCTTCCTCGAC
ATGGCGCGCCAGCCGGCCCCGGCGGGCCCTGAGGCGATCGGCCTAGAGATCGTCACCCCCGCCTTCATGATCTCCGAGCT
GCGGCGCGCCTTCGAGATCGGCTTTCTCCTGTTCATCCCCTTCCTTATCATCGACCTCGTGGTCGCCTCGGTACTGATGG
CAATGGGCATGATGATGCTGCCGCCGGCCACGGTCGCGCTGCCGTTCAAGCTGATCTTCTTCGTGCTGGTCGACGGCTGG
ACGCTGGTGGCGGGCTCCCTGATTCAGAGCTACGGAAGCTGA

Protein sequence : 
MTPSPSRPVPRSLPLTLLLAALLLAAGAGAAWAQSVTLDLGAGGTTERALQLVALITVLALAPSVLVMATSFTRIVVVLS
ILRSALGTQTAPPNTVMVSLALFLTAFVMAPTAREAYRTGVEPLMAGQISQSQAFERASAPFKTFMLRNVREKDLKLFLD
MARQPAPAGPEAIGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAMGMMMLPPATVALPFKLIFFVLVDGW
TLVAGSLIQSYGS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 3e-18 45
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-19 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 8e-19 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-18 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 9e-20 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-19 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mext_0427 YP_001637920.1 flagellar biosynthetic protein FliP VFG2338 Protein 1e-33 54
Mext_0427 YP_001637920.1 flagellar biosynthetic protein FliP VFG2494 Protein 3e-37 54
Mext_0427 YP_001637920.1 flagellar biosynthetic protein FliP VFG1259 Protein 3e-33 52
Mext_0427 YP_001637920.1 flagellar biosynthetic protein FliP VFG2016 Protein 5e-28 48
Mext_0427 YP_001637920.1 flagellar biosynthetic protein FliP VFG0394 Protein 5e-20 45
Mext_0427 YP_001637920.1 flagellar biosynthetic protein FliP VFG0044 Protein 4e-17 44
Mext_0427 YP_001637920.1 flagellar biosynthetic protein FliP VFG0188 Protein 7e-21 43