Gene Information

Name : Mext_0329 (Mext_0329)
Accession : YP_001637824.1
Strain : Methylobacterium extorquens PA1
Genome accession: NC_010172
Putative virulence/resistance : Virulence
Product : response regulator receiver
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 374554 - 375252 bp
Length : 699 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpd:RPD_2012 response regulator receiver

DNA sequence : 
ATGCGCCTGCTCATCATCGAGGACGACCGCGAGGCCGCCGCCTATCTGGTCAAAGCGTTCCGGGAAGCCGGGCACGCGGT
GGACCATGCGGGCGACGGCCTCGACGGCTATGCACTCGCCTGTGAGGGCGATTACGACGTGCTGATCGTCGATCGCATGT
TGCCGAAGCTCGACGGGCTTTCGCTCGTGCGCTCCCTGCGCGAGCAGGCGATCGCCACGCCGGTCCTCATCCTCTCGGCA
CTGGGCCAGGTGGATGACCGGGTGAAGGGGCTGAGGGCGGGCGGCGACGACTATCTCCCGAAGCCCTACGCCTTCTCCGA
GCTTCTCGCCCGCACCGAGGTGCTGGCCCGCCGCCGCACGGCCGCGACCGGCCAGAGCGAGGCCACCGCCTACCGGGTCG
GCGACCTCGAACTCGACCGGCTCTCGCACCGGGTGACGCGGGCGGGCCGCGAGATCGTGCTCCAACCCCGCGAGTTCCGG
CTGCTCGAATACCTCATGCGCCATGCCGGGCAGGTCGTGACCCGGACGATGCTGCTGGAGCATGTCTGGGACTACCATTT
CGATCCGCAGACCAACGTCATCGACGTCCACGTCTCGCGCCTGCGCGCGAAGATCGACCGCGGCTTCGAGCATCCGATGA
TCCACACGGTACGCGGCGCGGGCTACGTCATCCGGGCGGACGAGCCGCAAGCCTCGTGA

Protein sequence : 
MRLLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALACEGDYDVLIVDRMLPKLDGLSLVRSLREQAIATPVLILSA
LGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRTAATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFR
LLEYLMRHAGQVVTRTMLLEHVWDYHFDPQTNVIDVHVSRLRAKIDRGFEHPMIHTVRGAGYVIRADEPQAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-39 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 8e-39 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mext_0329 YP_001637824.1 response regulator receiver BAC0111 Protein 5e-57 50
Mext_0329 YP_001637824.1 response regulator receiver BAC0083 Protein 2e-48 48
Mext_0329 YP_001637824.1 response regulator receiver BAC0347 Protein 4e-50 47
Mext_0329 YP_001637824.1 response regulator receiver BAC0125 Protein 5e-48 47
Mext_0329 YP_001637824.1 response regulator receiver BAC0638 Protein 9e-41 47
Mext_0329 YP_001637824.1 response regulator receiver BAC0197 Protein 1e-42 45
Mext_0329 YP_001637824.1 response regulator receiver BAC0308 Protein 5e-44 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mext_0329 YP_001637824.1 response regulator receiver VFG0596 Protein 5e-40 43
Mext_0329 YP_001637824.1 response regulator receiver VFG1389 Protein 1e-34 43
Mext_0329 YP_001637824.1 response regulator receiver VFG1390 Protein 7e-41 42