Gene Information

Name : wcbA (Bpet2308)
Accession : YP_001630919.1
Strain : Bordetella petrii DSM 12804
Genome accession: NC_010170
Putative virulence/resistance : Virulence
Product : protein involved in capsular polysaccharide export
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG3563
EC number : -
Position : 2397947 - 2400016 bp
Length : 2070 bp
Strand : +
Note : -

DNA sequence : 
ATGATCGGGATCTTCTCCAGGCGCATGGCTGCCCAATTGTGCGTACGGGTTTTGTTGCGGGCGGATGTGCGCCGCCTGCA
CGTGTGGCACTGGCTGGTGCCTGCACGCGATGTGGATGCGATTGCCGGCTGGGGCTTGCGACCTACCACGCGCTGGCCGC
GCGCTTACGCCATGCGGAAGTCCTTGCCGTACGTTGCGCTTGAGGACGGCTTCCTGCGTTCTTATGCGCCGGGCCAACGC
GCGCCGTCATTGTCGTTGGTGGTGGACGGCGACGGCATTTACTATGCGGCCGGTAGCGGCAGTTCTCTAGAAACTCTGCT
GAATTCCGATGCTGACTTGCTGCACGGCATCGAAGATGCGTGCGCTCGAGCGCGTGATTTAATTTGCCGGGCGCAGTTGG
GCAAGTACAACGCTGCGCCGTCGTTGCCAGCCGGAATGTTGGGCGCCGGAGACCGAGGCCGGGTGCTGGTAGTTGATCAG
ACAGTTGGTGACGCAGCAATTGTGCATGGTGGCGCCAACGCCGCGACGTTCGAACGTATGCTCGCCGCTGCTCTGAACGA
GAATCCCGGCGCCACGGTCTACATCAAGACGCATCCGGAGGTCGGTGGCGGAGCGAAGCAGGGCTACTATTCATCATTGG
CTCCCATGGCTCGGGTGGTTCTGATAACCGAACCCGTTAGTCCCATGAGCCTGGTGTCACACATGGACCGGGTCTATGTC
GCCACGTCTCACCTGGGTTTCGAGGCATTGCTGGCTGGGAAGCCTGTCACCTGCTTCGGCACTCCATGGTATGCGGGTTG
GGGAGTTACCGAAGATCGCCAGGCTTGTGCGCACCGCATGCGCCGCCGCTCTGTGCAGGAATTGTTTGCCGCGGCGTATT
TCCACTACAGCCGCTATCTGGATCCGACCACGCACGGCGAGGGCAGTATTTTTCATGCCATCGATTGGCTGACACGCCAG
AAGCTCATGGCTGAGCATATGCAGGGTCGCTCCATCGCAGTCGGCTTCCGCCGTTGGAAGGCACGGCATGTGCGCGAATT
TTTGGGACTGGATGCTAGCCGGGTGCATTTTGTGCGCAATGCTCGCGCGGCCGCGCGGCTGGCGCCCGGTCCGCAGGATC
GCCTGGTGGTCTGGGGGAACGATTCTGTCGATCAGGTGCGATGTCTGGCCCGGCGAGTAGGGGCCAAGTTGCTGCGTATG
GAAGATGGTTTCTTGCGTTCTGTGGGCTTGGGGTCCGATTTCGTGCCGCCTTTGTCACTGGTGTTGGACGGCAGCGGCAT
GTATTTCGATCCGCGTGAGCCCAGCGATCTCGAAAACCTCCTGAATCAGCACGCGTTCAGTGTTGCCGACCTGTGCAGGG
CTCGCGCCATTCGGCAGTCGATTACCGACCTGGGGCTGACGAAGTACAACATTGAGCAACGCCGTGCACCGGAATGGCGA
GCGAAGGGCAAACGCATCATCCTGGTGCCAGGGCAAGTGGAAGACGATGCCTCGATTCGCTACGGTTGTGGCGAAGTGCG
TAGCAATCTGGGTTTGCTTCAGGCGACTCGCGCAGAACATCCTGAGGCATATATCGTGTATAAGCCGCATCCCGATGTGC
GAGCCCGTAATCGAGCCGGCCGAATGCATCTGAGCCGGGCCATGCAATACGCAGACGAGGTCGAGCTGTCTTGCTCCGTG
GTGAGTTGCATCGAGGCTTGCGATGAAGTGCACACCATGACTTCGCTGACGGGTTTTGACGCGCTGCTAAGGAATAAGCG
GGTGGTGGTGTATGGTCGCCCGTTCTATGCGGGCTGGGGGCTGACCATAGACAAGCTGCCCATGGCCCGCCGCACCCGCA
CACTGAACTTGGATGAGTTAGTGGCCGGTACGCTTCTGCACTACCCCTTGTACTGGGACCCGGTACTGAAAGGCTACACC
ACTTGTGAGGCCACCATCAATCAGCTGGTCCGCCAGCGCAACGCCATTATCGCCGCACGCGGCGAGCACGCGCTCTTGAT
GAGCGCGGCTTATCGATTATGGCGCAAAGTATGGTTGTGGCTGCAGTGCGGTTTTATCGTGAAGTTCTAA

Protein sequence : 
MIGIFSRRMAAQLCVRVLLRADVRRLHVWHWLVPARDVDAIAGWGLRPTTRWPRAYAMRKSLPYVALEDGFLRSYAPGQR
APSLSLVVDGDGIYYAAGSGSSLETLLNSDADLLHGIEDACARARDLICRAQLGKYNAAPSLPAGMLGAGDRGRVLVVDQ
TVGDAAIVHGGANAATFERMLAAALNENPGATVYIKTHPEVGGGAKQGYYSSLAPMARVVLITEPVSPMSLVSHMDRVYV
ATSHLGFEALLAGKPVTCFGTPWYAGWGVTEDRQACAHRMRRRSVQELFAAAYFHYSRYLDPTTHGEGSIFHAIDWLTRQ
KLMAEHMQGRSIAVGFRRWKARHVREFLGLDASRVHFVRNARAAARLAPGPQDRLVVWGNDSVDQVRCLARRVGAKLLRM
EDGFLRSVGLGSDFVPPLSLVLDGSGMYFDPREPSDLENLLNQHAFSVADLCRARAIRQSITDLGLTKYNIEQRRAPEWR
AKGKRIILVPGQVEDDASIRYGCGEVRSNLGLLQATRAEHPEAYIVYKPHPDVRARNRAGRMHLSRAMQYADEVELSCSV
VSCIEACDEVHTMTSLTGFDALLRNKRVVVYGRPFYAGWGLTIDKLPMARRTRTLNLDELVAGTLLHYPLYWDPVLKGYT
TCEATINQLVRQRNAIIAARGEHALLMSAAYRLWRKVWLWLQCGFIVKF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lipA NP_273145.1 capsule polysaccharide modification protein Not tested IHT-A Protein 8e-131 46
kpsC YP_854335.1 capsule polysaccharide export protein KpsC Not tested PAI I APEC-O1 Protein 9e-112 45
kpsC AAZ04470.1 capsule polysaccharide export protein Virulence PAI I APEC-O1 Protein 7e-112 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
wcbA YP_001630919.1 protein involved in capsular polysaccharide export VFG0259 Protein 4e-131 46
wcbA YP_001630919.1 protein involved in capsular polysaccharide export VFG0704 Protein 2e-111 45
wcbA YP_001630919.1 protein involved in capsular polysaccharide export VFG0692 Protein 5e-125 45