Gene Information

Name : serS (Bpet1587)
Accession : YP_001630195.1
Strain : Bordetella petrii DSM 12804
Genome accession: NC_010170
Putative virulence/resistance : Unknown
Product : seryl-tRNA synthetase
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG0172
EC number : 6.1.1.11
Position : 1639539 - 1640885 bp
Length : 1347 bp
Strand : +
Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA

DNA sequence :
ATGCTAGATCCGATACTGCTGCGCAAAGACCTGCAAACGGTCGTAAGCCGCCTGAAAACCCGCGGCGTCGACTTCGACAC
GCAACGATTCAACGAACTGGAAGCGCGCCGCAAGGCCGTCCAGACCGAAACCGAATCGCTGCAGGCGCGCCGCAACGCGC
TGGCCAAGCAAATTGGCCAGCTCAAGGCCCAAGGGCAGGATGCCTCGGCGGTGCTGGCCGAATCGCAGGCCATACCGGCC
CGCCTGAAGCAGCTCGAAGACGACCTGGCCGTCGTGCAGCAATCGCTGGGCGATCTGCTGATGGCCGTGCCCAACTTGCC
GCACGAAAGCGTGCCGGCGGGCGCCTCGGCCGACGACAACGTCGAAGTGCGCCGCTGGCTGCCCGGCCCGCCGGCGGCCG
ACGGCAATCCGCCGCCGTTGCCTTTCGAGCCCAAAGACCACGTGGCGCTGGGCGAGCCCCTGGGGCTCGACTTCGATACG
GCCGCCAAGCTGTCGGGCGCGCGTTTCTCGTTCATGCGCGGCCCGGTGGCGCGCCTGCACCGCGCGCTGGCCCAGTTCAT
GCTCGACCTGCAAACCGGCCAGCACGGCTACACCGAGTGCTACACGCCGTACATCGTCAACAGTTCCACGCTGTACGGCA
CCGGCCAACTGCCCAAGTTCAAAGACGATATGTTCTTCGTCACCAAGGGCGGCGAAGACGACGACCCCAAGGTCGACGAA
CGCGGCAACGCGCTGGCGCGCGAAGACCAATACCTGATCTCCACGTCTGAAATCACGCTGACCAGCGTGGCGCGCGACAG
CATTATTCCCGCCGCCAATCTTCCGCTGCGCCTGACCGCGCACACGCCTTGCTTCCGGTCCGAGGCGGGCAGCGGCGGGC
GCGACACGCGCGGCATGATCCGCCAGCACCAGTTCGACAAGGTCGAGATGGTGCAGATCGTCCATCCCGAAACGTCGTAC
CAGGTGCTGGAAGACATGGTGGGCCATGCCGAGCACGTGTTGCAGCTGCTCGAATTGCCGTACCGCGTGGTGCTGCTGTG
CACGGGCGACATGGGCTTCGGTTCGGCCAAGACCTACGATCTCGAAGTGTGGCTGCCGGCCCAGAACACCTGGCGCGAGA
TCTCGTCAGTATCCAACTGCGAAACCTTCCAGGCGCGCCGCATGCAGGCGCGCTTCCGCGCCGCGCAGGGCAAGCCCGAC
TACGTGCACACGCTCAACGGCTCGGGCCTGGCCGTGGGCCGCGCCCTGGTCGCCGTCCTCGAAAACCACCAGCAGGCCGA
CGGCAGCATCGCCGTGCCCAAGGTGCTGCAGCCCTACATGGGCGGCCTGACCGTACTGCAACCCTGA

Protein sequence :
MLDPILLRKDLQTVVSRLKTRGVDFDTQRFNELEARRKAVQTETESLQARRNALAKQIGQLKAQGQDASAVLAESQAIPA
RLKQLEDDLAVVQQSLGDLLMAVPNLPHESVPAGASADDNVEVRRWLPGPPAADGNPPPLPFEPKDHVALGEPLGLDFDT
AAKLSGARFSFMRGPVARLHRALAQFMLDLQTGQHGYTECYTPYIVNSSTLYGTGQLPKFKDDMFFVTKGGEDDDPKVDE
RGNALAREDQYLISTSEITLTSVARDSIIPAANLPLRLTAHTPCFRSEAGSGGRDTRGMIRQHQFDKVEMVQIVHPETSY
QVLEDMVGHAEHVLQLLELPYRVVLLCTGDMGFGSAKTYDLEVWLPAQNTWREISSVSNCETFQARRMQARFRAAQGKPD
YVHTLNGSGLAVGRALVAVLENHQQADGSIAVPKVLQPYMGGLTVLQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
serS YP_003446791.1 seryl-tRNA synthetase Not tested The aminoglycoside resistance gene cluster Protein 2e-90 49