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Name : topB3 (Bpet1448) Accession : YP_001630053.1 Strain : Bordetella petrii DSM 12804 Genome accession: NC_010170 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 1502488 - 1504500 bp Length : 2013 bp Strand : + Note : decatenates replicating daughter chromosomes DNA sequence : ATGCGGCTGTTCTTGTGCGAGAAGCCCTCCCAGGGCAAAGACATTGGCCGGATTCTCGGCGCCACGCAGCGCGGTGAAGG CTGTCTCAACGGTTCCGGCGTCACTGTCACCTGGTGCATCGGCCATCTCGTAGAAGCCGCTGCGCCCGAAGCCTACGACG AGCAGTTGAAGCGCTGGTCCATTGAGCAGTTGCCCATCATTCCCCAGAATTGGCGGGTCGAGGTCAAACCGAAGACCGCC ACGCAATTCAAGGTCGTCAAGGCGCTTCTGGCGAAGGCGACCCAGCTTGTCATCGCCACCGATGCCGACCGCGAAGGCGA GTTGATCGCTCGCGAGATCATCGAACTGTGCGGCTACCGCGGCCCCATCGAGCGGCTATGGTTGTCGGCACTCAACGATG CGTCCATCCGCGCCGCACTGGGCAAGCTCAGGCCATCGGCCGAGACGCTGCCGATGTACTACTCGGCGCTGGCACGATCG CGGGCCGACTGGCTCGTGGGAATGAACCTCAGCCGCCTGTTCACCGTGCTCGGTCGACAAGCGGGCTACGACGGCGTGCT GTCGGTCGGCCGCGTGCAGACACCGACGCTCAAGCTCGTGGTGGACCGCGACCGCGAAATTGCGGCCTTCGTGTCCGTAC CGTACTGGGCCATCGACGTGTCCCTGTCCGCAAGCGGCCAGTCTTTCACCGCGCAATGGGTTCCGCCCGATGCCTACACC GACGACACGGGCCGCTGCCTGCAGCAGCCGGTCGCACAGCGGGCCGCGCAGCAGATTCGCGGCGCGGGCAGCGCGCAGGT GGTGTCGGTCGAGACCGAGCGCGTGCGCGAAGGCCCGCCGCTGCTGTTCGACCTGGGCACCTTGCAGGAGGTTTGTTCCA AGCAACTTGGGCTGGACGTGCAGGAAACCCTGGAGATCGCCCAGGCCCTGTACGAGACGCACAAAGCCACGACGTACCCG CGCTCGGATTCCGGCTATCTGCCCGAAAGCATGTTCGCCGAGGTGTCCACGGTTCTCGACAGTCTGCTCAGGACCGATCC CTCGCTGCGCCCGATCATGGACCAGCTCGACCGCTCCCAGCGCTCGCGTGCATGGAATGACGGCAAGGTCACGGCGCACC ACGGCATCATTCCGACGCTCGAACCAGCGAACCTCTCGGCCATGAGCGAGAAGGAGTTGGCGGTGTACCGGCTGATCCGG GCGCATTACCTCGCGCAGTTCCTCCCTCACCACGAGTTCGATCGCACCGTGGCGAACCTAGCCTGCGGCCAGCAGAAACT GGCGGCCACGGGCAAGCAGGTCGTGGTGAAGGGCTGGCCCCTGGTACTGACCGAGCCTCAGCCCGACGAGGACGGCGACG CTGCGGCGCGCAGCCAGGTGCTTCCCGCGCTGCGCGAGGGCTTGGCATGTCTGGTGGCCGACGTCGATCTGAAGGCGCTC AAGACGCTGCCACCCAGGCCGTACACGCAGGGCGAACTTGTCAAATCCATGAAGGGAGTCGCCAAGCTGGTGACGGACCC GCGCCTGAAGCAGAAGTTCAGGGACACGGTCGGCATCGGCACCGAAGCGACGCGAGCCAACATCATCAGCGGCCTGATCG CACGCGGCTATATCGTGAAGAAGGGGCGCGCCATCCGCGCATCCGATGCTGCTTTCACACTGATCGACGCCGTGCCCGCG GCGATCGCCGACCCTGGCACTACCGCTGTCTGGGAACAGGCGCTCGACATGATCGAAGCTGGACAGCTTACGCTGGACGT ATTCATCGGAAAGCAGGCTGCATGGATTTCGCAGTTGATCGCGCAGTACAGCATCGCGTCCCTGTCCATCAAGGTTCCCC AAGGGCCGGCATGCCCGCAGTGCGGCGCACCCACGCGTCAGCGCAGCGGCAAGAGCGGCCCGTTTTGGTCGTGCAGTCGT TACCCCGACTGCAAAGGCACGCTGCCGGTCGAATCCGGCACGTCCAAGCGCGGTGCCTCGCGCCCGCACCGCAGCGGCCG CCAAGGTTCCTGA Protein sequence : MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAAPEAYDEQLKRWSIEQLPIIPQNWRVEVKPKTA TQFKVVKALLAKATQLVIATDADREGELIAREIIELCGYRGPIERLWLSALNDASIRAALGKLRPSAETLPMYYSALARS RADWLVGMNLSRLFTVLGRQAGYDGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIDVSLSASGQSFTAQWVPPDAYT DDTGRCLQQPVAQRAAQQIRGAGSAQVVSVETERVREGPPLLFDLGTLQEVCSKQLGLDVQETLEIAQALYETHKATTYP RSDSGYLPESMFAEVSTVLDSLLRTDPSLRPIMDQLDRSQRSRAWNDGKVTAHHGIIPTLEPANLSAMSEKELAVYRLIR AHYLAQFLPHHEFDRTVANLACGQQKLAATGKQVVVKGWPLVLTEPQPDEDGDAAARSQVLPALREGLACLVADVDLKAL KTLPPRPYTQGELVKSMKGVAKLVTDPRLKQKFRDTVGIGTEATRANIISGLIARGYIVKKGRAIRASDAAFTLIDAVPA AIADPGTTAVWEQALDMIEAGQLTLDVFIGKQAAWISQLIAQYSIASLSIKVPQGPACPQCGAPTRQRSGKSGPFWSCSR YPDCKGTLPVESGTSKRGASRPHRSGRQGS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 91 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 75 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 63 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 7e-167 | 49 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 7e-167 | 49 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 5e-167 | 49 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 1e-167 | 49 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 3e-167 | 49 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 5e-121 | 41 |
