Gene Information

Name : RSal33209_0687 (RSal33209_0687)
Accession : YP_001623848.1
Strain : Renibacterium salmoninarum ATCC 33209
Genome accession: NC_010168
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 572117 - 572842 bp
Length : 726 bp
Strand : +
Note : -

DNA sequence : 
GTGAATATGCCGCAGGGGCCGGCCACCCCGGAAGTGGGCAACCGAAAGATCCTTCTTGTCGAGGACGAGGAGTTGATCGC
TCAAGTCGTGCGCGACTATCTTGTCAAAGCTGGTTACCAAGTTGAACTAGCTAATGATGGCTTCACTGCTTTGCACTTGG
CTTCCGCATCAAACCCGGACCTCATCATCTTGGATCGGATGCTGCCGGGACTAGACGGTGCAGAGGTTTGCCGTCGGATC
AGACAGACCATGAGTATGCCGATTATTCTGCTTACCGCCCTTGGCACCGAAGACGATCGTATTCTGGGCTTGGAAATGGG
TGCCGATGATTACGTGACAAAGCCGGTTTCGCCGCGTGAACTGGTCTTGAGAGTCAATTCAGTGCTTCGGCGCAGTGTCA
AAGAATTCACTCCGGAGCCTGTCGTCGAATTGGCCGGATTTGTGCTTAACCCGGCTTCGCGGGTAGTGAGTTTGAATGGC
GTTGACCTTGCTTTGACGGCGCGCGAGTTTGATTTACTGGCGTTTTTCTTACGCCGGCCCAACCAGGTGTTTAGCCGGGA
GGATCTTATCCGGGCCGTCTGGGGTTGGGACTTTGGCGATTTATCTACGGTGACCGTGCACGTACGTCGTTTGCGGGAAA
AGATTGAGCAAAACCCTACGCAGCCGCTGCTTTTGCACACGGTGCGGGGTCTGGGTTACCGCTTCGATGTGCCTGGAGCG
GCTTAA

Protein sequence : 
MNMPQGPATPEVGNRKILLVEDEELIAQVVRDYLVKAGYQVELANDGFTALHLASASNPDLIILDRMLPGLDGAEVCRRI
RQTMSMPIILLTALGTEDDRILGLEMGADDYVTKPVSPRELVLRVNSVLRRSVKEFTPEPVVELAGFVLNPASRVVSLNG
VDLALTAREFDLLAFFLRRPNQVFSREDLIRAVWGWDFGDLSTVTVHVRRLREKIEQNPTQPLLLHTVRGLGYRFDVPGA
A

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-27 43
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 4e-33 43
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-32 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-26 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSal33209_0687 YP_001623848.1 two-component response regulator FJ349556.1.orf0.gene Protein 5e-33 44
RSal33209_0687 YP_001623848.1 two-component response regulator NC_012469.1.7685629. Protein 2e-34 44
RSal33209_0687 YP_001623848.1 two-component response regulator NC_012469.1.7686381. Protein 4e-33 42
RSal33209_0687 YP_001623848.1 two-component response regulator HE999704.1.gene2815. Protein 4e-33 42
RSal33209_0687 YP_001623848.1 two-component response regulator AE000516.2.gene3505. Protein 7e-34 41
RSal33209_0687 YP_001623848.1 two-component response regulator BAC0111 Protein 2e-33 41
RSal33209_0687 YP_001623848.1 two-component response regulator AF155139.2.orf0.gene Protein 3e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSal33209_0687 YP_001623848.1 two-component response regulator VFG0596 Protein 1e-27 43
RSal33209_0687 YP_001623848.1 two-component response regulator VFG1563 Protein 2e-33 43
RSal33209_0687 YP_001623848.1 two-component response regulator VFG1702 Protein 9e-33 43