Gene Information

Name : RSal33209_3474 (RSal33209_3474)
Accession : YP_001626597.1
Strain : Renibacterium salmoninarum ATCC 33209
Genome accession: NC_010168
Putative virulence/resistance : Unknown
Product : IS994
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 3084294 - 3084659 bp
Length : 366 bp
Strand : +
Note : OrfA

DNA sequence :
ATGGCAGGGAAAACTACGACACGGTATCCGCAGGAGTTGAAGGATCATACGGTGCACATGGTGGCGGAGATGGAGGGTGC
ATCTTCGGAGTGGGCGGCGATGCAAAAAGTTGCCCAGCTTTTGGGTGTGGGTGTGCCGGAAACGGTGCGTAAATGGGTCC
GGCAAGCCGAGATCGATGTTGGTACTAGAACTGGAACAACGAGCACGGAATCGGCCGAGCTGAAACGGTTACGGCGTGAG
AACGCTGAGCTGAAACGGGCGAACGCGATCCTTCGGAGTGCTTCAGCTTTTTTCGCGGTCGAACTCGACCGCCACAACAC
TGATCGTGAAATACATCAAGGACCATGCCGGTCACCGCGAGAATAA

Protein sequence :
MAGKTTTRYPQELKDHTVHMVAEMEGASSEWAAMQKVAQLLGVGVPETVRKWVRQAEIDVGTRTGTTSTESAELKRLRRE
NAELKRANAILRSASAFFAVELDRHNTDREIHQGPCRSPRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1639 NP_287142.1 hypothetical protein Not tested TAI Protein 3e-13 49
Z1661 NP_287163.1 hypothetical protein Not tested TAI Protein 3e-13 49
Z1199 NP_286734.1 hypothetical protein Not tested TAI Protein 3e-13 49
Z1222 NP_286757.1 hypothetical protein Not tested TAI Protein 3e-13 49
ECO111_3720 YP_003236060.1 putative IS629 transposase OrfA Not tested LEE Protein 2e-11 48
ECO111_3775 YP_003236110.1 putative IS629 transposase OrfA Not tested LEE Protein 2e-11 48
Z4335 NP_289560.1 hypothetical protein Not tested OI-122 Protein 2e-11 48
unnamed CAD42084.1 hypothetical protein Not tested PAI II 536 Protein 2e-10 47
IS629 CAC37925.1 hypothetical protein Not tested LEE Protein 7e-13 47
IS629 CAI43820.1 hypothetical protein Not tested LEE Protein 7e-13 47
IS629 CAI43841.1 hypothetical protein Not tested LEE Protein 7e-13 47
ECO103_3584 YP_003223442.1 IS629 transposase OrfA Not tested LEE Protein 1e-12 47
IS629 CAI43908.1 hypothetical protein 1 Not tested LEE Protein 7e-13 47
APECO1_3498 YP_854313.1 transposase; OrfA protein of insertion sequence IS629 Not tested PAI I APEC-O1 Protein 4e-09 47
ORF_36 AAZ04445.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 3e-09 47
unnamed AAF09023.1 unknown Not tested SHI-O Protein 5e-11 46
tnpE AAD44738.1 TnpE Not tested SHI-2 Protein 5e-11 46
S3184 NP_838467.1 IS629 orfA Not tested SHI-1 Protein 2e-10 45
SF2979 NP_708753.1 IS629 ORF1 Not tested SHI-1 Protein 2e-10 45
S4062 NP_839231.1 IS629 orfA Not tested SHI-2 Protein 3e-09 45
SF3706 NP_709445.1 IS629 ORF1 Not tested SHI-2 Protein 6e-10 45
unnamed AAL67399.1 TnpE-like protein Not tested PAI II CFT073 Protein 1e-10 45
c5168 NP_757016.1 hypothetical protein Not tested PAI II CFT073 Protein 2e-10 45
unnamed ADD91740.1 hypothetical protein Not tested PAI-I AL862 Protein 1e-10 45
c5214 NP_757062.1 hypothetical protein Not tested PAI II CFT073 Protein 2e-10 45
c3596 NP_755471.1 hypothetical protein Not tested PAI I CFT073 Protein 3e-08 44
c5177 NP_757025.1 hypothetical protein Not tested PAI II CFT073 Protein 3e-08 44
r13 AAC61722.1 R13 Not tested PAI I CFT073 Protein 2e-08 44
ECUMN_3344 YP_002414020.1 transposase ORF A, IS629 Not tested Not named Protein 3e-08 44
unnamed AAL67404.1 R13-like protein Not tested PAI II CFT073 Protein 2e-08 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSal33209_3474 YP_001626597.1 IS994 VFG1603 Protein 7e-11 47
RSal33209_3474 YP_001626597.1 IS994 VFG0606 Protein 2e-10 45
RSal33209_3474 YP_001626597.1 IS994 VFG0643 Protein 5e-11 45
RSal33209_3474 YP_001626597.1 IS994 VFG1717 Protein 8e-09 44