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Name : lysS (RSal33209_3198) Accession : YP_001626329.1 Strain : Renibacterium salmoninarum ATCC 33209 Genome accession: NC_010168 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 2843948 - 2845453 bp Length : 1506 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : GTGACCGACGAAAAAACCCCGCAGAGTACTGAAGTTTCCGAGCAGATGCAGATTCGGTTGGACAAACGTGCCAGCCTTCT GGCGCGCGGGTTGGAACCGTACCCGGTGGGTGTTCCGCGCACGCACAGCCTGATTGAAGTTCGGCAGAAGTTCGATCATC TACAAGCTGATGAAACTAGTGGCGAAATTGTTGGCGTGTCCGGACGAGTGGTTTTTATTCGCAACACCGGCAAGCTGTGC TTCGTAACACTCCAAGAAGGAAGCGGTACTCGACTCCAAGGGATGCTTAGCCTGGCTAATGTGGGCGAACAATCGCTTGC TGATTGGAAGGCTCTTGTCGATCTAGGCGATCATGTTTTCTTGCATGGTGAGGTTATTTCTTCCAAGCGCGGAGAGCTAT CCGTTTTTGCTGATTCTTGGCAGATGGTTTCTAAAGCATTGCGCCCGTTGCCGGTTCTACACGCAGATTTGAATGAGGAA AATCGCGTTCGGCAACGTTATGTCGATCTCATGGTCCGTGACGAGGCGCGGCAGATGGTGCGCACGCGTGCCGCAATAAC TCGTTCCGTCCGAGAAACCTTGAATTCACTGGACTATGTTGAAGTAGAAGGTCCAGTTCTACAACTGATCCATGGTGGAG CTTCTGCGCGTCCGTTTGAAACCCATATCAATGCATTTGACCAGAAAATGACTCTGCGCATAGCGCTCGAGCTCTATCTG AAACGCGCTGTGGTTGGCGGAATCGATCGGGTGTATGAAATGGGTCGAATTTTCCGCAACGAGGGCGTTGATTCAACGCA TAGTCCAGAATTCACGATGCTTGAATGCTATGAAGCTTATGCTGACCAATTTGTGATGGCAGAGCGAATGAGACAAATCA TCCTGAATGCCGCGGATCTGATTGGTAGCCGGCAAATCGAAACGCCAGCCGGAGTCATTGATCTCGACGGCGAATGGCAA TGGCTCGGTGTATACCCTGGGCTTTCTGAGGTGGTTGGGCAGAAGATTACTCCGGAGACAAAAGCCGAGACATTACAAGC GTTGGCGGTGGAGCATGAAATCAAAATTGACCCGGCCTGGGATGCCGAAAAGCTTGTTGTGGAGCTCTTTTGCGAACTAG TTGAGCCAAAGCTATTGCAACCGACTTTTGTCTATGATTACCCGCCATCGGCGCAGCCACTGGCTCGTCCGCATCGCAGT GAACCTGGTTTGATTGAAGCTTGGGATCTGATTATCGGCGGTATGGAACGTGGCACCGCCTTTTCAGAGTTGATTGATCC GGTCATCCAGCGCGAACGACTCACAGAGCAATCGTTGCGTGCCGCCAGCGGTGATCCAGAAGCAATGCAGCTGGATGAAG ACTTCCTTCGAGCCCTCGAGTATGGGGCGCCACCGATGGGTGGAATCGGCTTGGGCATCGACCGATTGGTGATGCTTTTC ACCGGTGTTGGTATCCGCGAGTCGATTCTTTTTCCTTTGCTCAAACCAGATACGCAAAGAAGCTGA Protein sequence : MTDEKTPQSTEVSEQMQIRLDKRASLLARGLEPYPVGVPRTHSLIEVRQKFDHLQADETSGEIVGVSGRVVFIRNTGKLC FVTLQEGSGTRLQGMLSLANVGEQSLADWKALVDLGDHVFLHGEVISSKRGELSVFADSWQMVSKALRPLPVLHADLNEE NRVRQRYVDLMVRDEARQMVRTRAAITRSVRETLNSLDYVEVEGPVLQLIHGGASARPFETHINAFDQKMTLRIALELYL KRAVVGGIDRVYEMGRIFRNEGVDSTHSPEFTMLECYEAYADQFVMAERMRQIILNAADLIGSRQIETPAGVIDLDGEWQ WLGVYPGLSEVVGQKITPETKAETLQALAVEHEIKIDPAWDAEKLVVELFCELVEPKLLQPTFVYDYPPSAQPLARPHRS EPGLIEAWDLIIGGMERGTAFSELIDPVIQRERLTEQSLRAASGDPEAMQLDEDFLRALEYGAPPMGGIGLGIDRLVMLF TGVGIRESILFPLLKPDTQRS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 8e-120 | 50 |
