Gene Information

Name : RSal33209_2904 (RSal33209_2904)
Accession : YP_001626041.1
Strain : Renibacterium salmoninarum ATCC 33209
Genome accession: NC_010168
Putative virulence/resistance : Unknown
Product : IS994
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2586293 - 2587183 bp
Length : 891 bp
Strand : +
Note : OrfB

DNA sequence : 
GTGGGGTGTCGAGTCGATCTGCCAGGTGCTTACTGGGACGGGGTGAAGACCACCCCGTCCACGTACTACGAATGGGTGGA
TAAAACACGATCTCACCGAGAACAACGTGATGAGGTGCTCAAGCCCGTGATCCAGAAGGTGTATGCCGCTAATTACGGGG
TGCACGGCACCAGGAAAGTCTGGTTGGCGATGAACCGTGAAGGTGTGCCGGTGGCCAGGTGCACGGTAGAACGGCTCATG
GGGTTACTTGGCATACAGGGTGCGGTCCGTGGCAAGGTCAAACGCACCACGATCAAAGACTCGAAGGCGGCCCGAGCGAA
GGACTTGGTCCGCCGTGATTTCACACCAACGGCACCGGATCGGCTATGGGTAGATGATTTCACCTATGTTTCGACCTGGT
CCGGGTGGGTCTATGTTGCCTTCGTGATCGATGCCTACTCTCGGAGGATCCTGGGCTGGTCAGCGAGTGCTTCTATGAAC
ACCGTGCTAGTGCTCAACGCAGTTAATCAGGCAATCTGGAGTCGTGAACGGGCCGGGGCTGAGATTTCCGGGGTGATTCA
TCATCACGATGCCGGGGCTCAATACGCCTCCTTGGCCTTCACCGAACGCCTGGCCCAGGCCGGTATCCGCCCCTCGATCG
GTTCTGTGGGTGATAGTTACGACAACGTCTTGGCGGAAACCATCAACGGGCTTTATAAGACCGAGCTGATCAAACCCGGC
AAGCCCTGGCGGACTCTAGAAGAAGTCGAAATCGGCACCGCTGAATGGGCCGATTGGTACAACCACCGAAGGCTCTACCA
GTACTGCGGAGACATCCCACCAGTAGAGCTAGAAAACCACTACTACAATCACTACCAGAGCACGGCAGCCGCCGACAGGC
TCATCGTCTGA

Protein sequence : 
MGCRVDLPGAYWDGVKTTPSTYYEWVDKTRSHREQRDEVLKPVIQKVYAANYGVHGTRKVWLAMNREGVPVARCTVERLM
GLLGIQGAVRGKVKRTTIKDSKAARAKDLVRRDFTPTAPDRLWVDDFTYVSTWSGWVYVAFVIDAYSRRILGWSASASMN
TVLVLNAVNQAIWSRERAGAEISGVIHHHDAGAQYASLAFTERLAQAGIRPSIGSVGDSYDNVLAETINGLYKTELIKPG
KPWRTLEEVEIGTAEWADWYNHRRLYQYCGDIPPVELENHYYNHYQSTAAADRLIV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 3e-50 55
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 1e-50 54
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 1e-57 54
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-60 52
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 9e-58 52
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 2e-58 52
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 4e-60 52
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 2e-58 52
Z1221 NP_286756.1 transposase Not tested TAI Protein 4e-60 52
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 2e-58 52
Z1198 NP_286733.1 transposase Not tested TAI Protein 3e-60 52
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 1e-58 52
Z1638 NP_287141.1 transposase Not tested TAI Protein 3e-60 52
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 3e-60 52
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 9e-60 52
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 9e-60 52
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-59 51
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-59 51
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-59 51
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 8e-42 51
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 1e-56 50
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 1e-47 45
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 1e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSal33209_2904 YP_001626041.1 IS994 VFG1602 Protein 8e-57 50