Gene Information

Name : RSal33209_2862 (RSal33209_2862)
Accession : YP_001626000.1
Strain : Renibacterium salmoninarum ATCC 33209
Genome accession: NC_010168
Putative virulence/resistance : Virulence
Product : Fe3+-siderophore transport system, ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2552054 - 2552929 bp
Length : 876 bp
Strand : +
Note : -

DNA sequence : 
ATGGCCGGATTGCCCCAACAAGACAAACAAGCAAAGAACCCTGATGAACTCTCGAAGGAGAAGCGGATGAGCACCGAGGC
GAATTCTCACTCGGCTAGCCAAGCCGGGCCAACCCTGGCGGCCGAGGGCATATCGCTGGCTTACGGTGAACGGACCGTGG
TCGATGGGCTCAGCGTCGAACTTCCGCAGGGGCAGGTGACGATGATTGTTGGCGCAAACGCCTTCGGTAAGTCCACCCTG
TTGCGCGGATTGGCAAGATTGCTCAAGCCCGGTGCTGGCTCGGTATTGCTCGATGGCACTGACATTCACAAGTTGCCGGC
CAAACAGGTAGCTCGGCGATTGGGGCTGCTACCCCAATCGCCCATAGCACCTGACGGCATTACCGTCTCAGAGCTGGTGG
GCCGCGGCGGCTACCCGCATCAGGGCTGGTTCCGAAAATGGAGCAAAGAGGACGACGACGCCGTAGCTGAGGCGTTAGAG
GCTACCGACACTTTGCAACTGGCAGAGCGTGGTGTGGACGAGCTATCGGGTGGTCAGCGTCAGCGAGTTTGGATTGCAAT
GGCGCTTGCCCAGCAGACTCCACTACTGCTTTTAGATGAGCCGACGACCTACTTGGATATGGCGCATCAGGTTGAAGTGC
TTGATTTGGTTACCGAACTCAACCGGAGCCGGGGGACCACCGTGGCGATTGTTCTGCATGAACTCAACCTGGCAGCTAGG
TACGGCGATCACCTTATTGCGATGAAAAATGGCGCAATTGCTGCGCAAGGTACACCTTCCAAAGTGTTGACCGAAGAGCT
GGTTCGAGAAGTTTTTGGTTTGGAATCAGTGATCTTGCCGGATCCGGTGACCGGGGCACCCATGGTGGTGCCGTAA

Protein sequence : 
MAGLPQQDKQAKNPDELSKEKRMSTEANSHSASQAGPTLAAEGISLAYGERTVVDGLSVELPQGQVTMIVGANAFGKSTL
LRGLARLLKPGAGSVLLDGTDIHKLPAKQVARRLGLLPQSPIAPDGITVSELVGRGGYPHQGWFRKWSKEDDDAVAEALE
ATDTLQLAERGVDELSGGQRQRVWIAMALAQQTPLLLLDEPTTYLDMAHQVEVLDLVTELNRSRGTTVAIVLHELNLAAR
YGDHLIAMKNGAIAAQGTPSKVLTEELVREVFGLESVILPDPVTGAPMVVP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 9e-65 54
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-56 49
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-56 49
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 3e-56 49
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 3e-56 49
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 9e-56 48
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-61 44
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-61 44
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 8e-49 43
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-48 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-48 41
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-48 41
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-48 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSal33209_2862 YP_001626000.1 Fe3+-siderophore transport system, ATP-binding protein BAC0164 Protein 6e-56 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSal33209_2862 YP_001626000.1 Fe3+-siderophore transport system, ATP-binding protein VFG0925 Protein 1e-67 54
RSal33209_2862 YP_001626000.1 Fe3+-siderophore transport system, ATP-binding protein VFG1042 Protein 5e-56 48