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Name : hsdR1 (ACL_0591) Accession : YP_001620584.1 Strain : Acholeplasma laidlawii PG-8A Genome accession: NC_010163 Putative virulence/resistance : Unknown Product : type I site-specific restriction-modification system, R (restriction) subunit Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : 3.1.21.3 Position : 624164 - 627307 bp Length : 3144 bp Strand : + Note : - DNA sequence : ATGGCTGTTAAAGTATTCTTTGAATCTGATGTAGAAGAAGCTACATTAGAATGGTTTCAGGAACTAGGATATCAAACTGA GTTTGGTCCTAATATTGCTCCTGAAGGACCATATCCAGAAAGAGCATCCTACACTGATGTCATATTGATTGAGCGATTAA AAGAATCGCTTTTTCGCTTGAATAAATCACTTCCTAAATCAGCTATTGAAGATGCTATAAGACAAATAACGATTCCAAAA CAAATAGCTCTTATTGAAAATAATAGAACTTTTCATAAGATGATCACTGATGGTGTTGATGTTTCATATCACGATCAAAC TGGAAGACTGGTACACTCTCAAGTTAGAATCTTTGATTTCAATGAACCTACAAATAACGACTATTTAGTTGTTAATCAAT TTACTGTTGTTGAAAGTAGAGTTGAAAAAAGACCAGACGTTGTTGTTTTTGTCAATGGACTACCTTTAGTAGTATTTGAA CTGAAAACAGCATCCGATGAAAACGTATCAATTAAATCCGCTTTTAGACAAGTTAAAAACTACCAACAGTCAATTAGTAG TTTATTTGTCTATAATTCGTTTAACGTCATTAGTGATGGCTTACATGCTAAAGCAGGTACGATTACATCCGATGAAGATC GCTTTATGACTTGGCGTACAACAGATGGTAAAGAAATCGCACCAACAACGATCCCTCAACTAGAAACACTGATTAAAGGT ATGTTTGATAAGAAGCGATTCTTAGATATCATTAAGCAATACGTTTTATTCCAAAAACATGAATCAGGTTATATTAAAAT TCTTGCTGGGTATCACCAATATCACGCAGTTAATACTGCGTTAGAGAAAACCTATGAAGCTACATCTGCACATGGTGATA GACGTATTGGGGTCATATGGCATACCCAAGGTAGTGGTAAATCACTTTCGATGGTTTTTTATGCAGGAAAACTGGTTATC TCACAAGAGCTATCTAATCCAACTATTGTTATTATCACAGATAGAAATGACCTAGACGATCAACTATTTCTAACGTTCTC TAAATCGAGTGATTTATTAAGAAGTATTCCAGATCAAGCAGCATCAAGAGAACATTTAAAAGAGTTACTAAATGGTAGAG ACTCAGGTGGCATTATTTTTACTACGATCCAAAAGTTTTCACCTGATGATAATGGAAATGTAACGGCATTAACCAATAGA AAAAATGTCATCGTCTTAGCTGATGAAGCACATCGAAGCCAATATGGATTTAGTGCTAAAGTTGTTAAATCTCAAGATGA AGCTTTTGAAAAATATGGTTATGCAAAATACCTAAGAGATTCATTACCCAATGCATCATACATTGGTTTTACGGGTACAC CCATTGAAACCACAGATAAGAATACAAGAGCTGTTTTTGGTGATTATATCGATATTTACGATATGTCACGAGCAGTTGAA GATAAAACAACCGTTAAGATATTTTATGAAAGTAGAATTGCTCAAATCGACTTTACAGAAGAATATGATTTGATTGATGA AAACTATGATGAAATCACAGAATATCAAGAAGAAACCCAAAAAGAAGGATTAAAACGCAAGTGGGCAAGACTTGAAGCAA TTGTTGGATCAGAGTCAAGAATCAAGACAGTTGCTAAAGATATAGTTGAACACTTCGAAAAAAGACAAGCAACCATGGAA ACGCCAGTCGGTAAAGCTATGATTGTTGCGATGTCAAGAAGAATAGCAGTTGAACTCTATGAAGCCATTGTTAAACTAAG ACCAGAGTGGCATTCAGATGATGTCTTAAAAGGGAAAATCAAAGTAGTTATGACTGGATCATCAAGTGATCCTGAATCAT GGCAAAAACATATAGGCACTAAGCAAACAAGAGAAACACTATCAGAAAGAATGAAAGATAATAATGATGAGCTTGAATTA GTCATTGTTAGAGATATGTGGTTAACTGGATTTGATGTCCCAAGTATGCATACCATGTATGTCGATAAACCAATGCAGGG ACACAACCTCATGCAAGCCATCGCAAGAGTTAACCGAGTATTCAAAGAGAAACAAGGCGGACTTGTTGTTGACTATATTG GTATAGCTGACCGATTAAAGAAAGCATTAATGCAATATACAGATAATGATAGAGAACAAGTAGGTGTAGATACTGCGCTT GCAGTATCAGTCATGTTAGAAAAGTTAGATATTGTAAGAGATATTTTGCATCAACATGATTATTCAAAATACTTTGGTGA TCGGTATAGTGAAAAACTCCAAGTGATTATGGAGACAATTGATTTTGTTATCGGATTAAGAGAAGAAAGAAAAAATGACT TCTTAAAATTTGTTTCAGAGCTTTCTAAAGCCTATTCACTATGTTCAACTACAGAAGAAGCAGAAAAACACAATGTTGAA ATTGGGTTCTTTAAGTCTGTAAGGGCAGGTATTATTAAACTATCAACTGATACAAGTAAAAAGAAATCTGTCGATCAACT AGATTCAGAACTCAATCAACTGATTTCTAAATCACTTAAATCAGATAAAGTGATTGACATCATGGCAGAAATCGGATTAT CAAAACCAGATATCTCAATCCTTTCTGACGAGTTCTTAGAAGAATTTAATAAGATGAATCATAAGAATGTTGCCATTGAA CTGTTAAAGCGTCTCATTAAAGGTAAACTTAAAATGATTGCTAGAAAGACGATTGTTCAATCTAGACAGTTTTCAGAACT TTTAGAAGATGCTCTTGCTAAATATCAAGCTAGATTAATAGATTCTACCGTTGTTATTCAAGAACTAATAGAACTAGCAA AAGATATTACAAAAGCTGCAGAATCAGGAAAAGAGTCTGGTTTAACTGAGGATGAGTTTGCATTCTATGAAGCATTGTCA TCAAACATGACAGCAAAAGAAGTCATGGGAACAGATATCTTAAAAGAAATTGCTAAAGAGCTAACTAAAAAGATAAAATC AAGTACTACAATTGATTGGAATATCAGAGATTCTGTAAGAGCAAAGATTAGATTTGAAATCAAAGTCTTACTAAAGAAAT ATAACTATCCACCAGATGATCCAAAGGATCCAAATAACTATGATAAATCAGTCCAATTGATAATGGAACAAACTGAACTT GTTTGTGAAAATGAATCTAGATAG Protein sequence : MAVKVFFESDVEEATLEWFQELGYQTEFGPNIAPEGPYPERASYTDVILIERLKESLFRLNKSLPKSAIEDAIRQITIPK QIALIENNRTFHKMITDGVDVSYHDQTGRLVHSQVRIFDFNEPTNNDYLVVNQFTVVESRVEKRPDVVVFVNGLPLVVFE LKTASDENVSIKSAFRQVKNYQQSISSLFVYNSFNVISDGLHAKAGTITSDEDRFMTWRTTDGKEIAPTTIPQLETLIKG MFDKKRFLDIIKQYVLFQKHESGYIKILAGYHQYHAVNTALEKTYEATSAHGDRRIGVIWHTQGSGKSLSMVFYAGKLVI SQELSNPTIVIITDRNDLDDQLFLTFSKSSDLLRSIPDQAASREHLKELLNGRDSGGIIFTTIQKFSPDDNGNVTALTNR KNVIVLADEAHRSQYGFSAKVVKSQDEAFEKYGYAKYLRDSLPNASYIGFTGTPIETTDKNTRAVFGDYIDIYDMSRAVE DKTTVKIFYESRIAQIDFTEEYDLIDENYDEITEYQEETQKEGLKRKWARLEAIVGSESRIKTVAKDIVEHFEKRQATME TPVGKAMIVAMSRRIAVELYEAIVKLRPEWHSDDVLKGKIKVVMTGSSSDPESWQKHIGTKQTRETLSERMKDNNDELEL VIVRDMWLTGFDVPSMHTMYVDKPMQGHNLMQAIARVNRVFKEKQGGLVVDYIGIADRLKKALMQYTDNDREQVGVDTAL AVSVMLEKLDIVRDILHQHDYSKYFGDRYSEKLQVIMETIDFVIGLREERKNDFLKFVSELSKAYSLCSTTEEAEKHNVE IGFFKSVRAGIIKLSTDTSKKKSVDQLDSELNQLISKSLKSDKVIDIMAEIGLSKPDISILSDEFLEEFNKMNHKNVAIE LLKRLIKGKLKMIARKTIVQSRQFSELLEDALAKYQARLIDSTVVIQELIELAKDITKAAESGKESGLTEDEFAFYEALS SNMTAKEVMGTDILKEIAKELTKKIKSSTTIDWNIRDSVRAKIRFEIKVLLKKYNYPPDDPKDPNNYDKSVQLIMEQTEL VCENESR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 53 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 52 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 52 |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 47 |
