Gene Information

Name : sce9222 (sce9222)
Accession : YP_001619875.1
Strain : Sorangium cellulosum So ce 56
Genome accession: NC_010162
Putative virulence/resistance : Virulence
Product : sigma-54 dependent DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 12843035 - 12844441 bp
Length : 1407 bp
Strand : -
Note : Family membership

DNA sequence : 
ATGGCTGACGATCTGGCACAAGTCCCCCCGAGCGCGCCGCCCGCTGGCCCCGCTGCGCCGCCGCCCGGCGCGCCGACGGT
CCTCGTGGTCGACGACGAGCCGTCGAACGTCGCCTCCATCGAGAAGATCTTCCAGCGCGACGGCATGCGCGTCATCACCG
CGGACAGCGCGAAGGCGGCGCTGGAGATCGTGCGCAGCCGCCGCGTCGAGGTCGTCCTGACCGACCTGATGATGCCGGGC
GTCAGCGGCCTCGAGCTGCTCCGCGCGCTGAAGCAGCTCGCGCCCGACACCGAGGTCGTGATGATGACCGCCTACGGGAC
CGTCGAGACCGCGGTCCAGGCCATGCGCGAGGGCGCCTACGACTTCGTGGAGAAGCCGCTCAAGCGGATGACGATCATCA
AGAGCGTGCGCAAGGCGGCCGAGCGCCAGTCGCTCGTCGCCGAGAACCGCTCGCTCCGGCAGGAGATCAAGCTGCTCACG
AAGCGCGAGATCGTCGGATCGAGCCCGACGCTCCGCCGCGTGCTCGACATCGCGACCCAGGCGGCGCCCTCGAGCGCCAC
GGTGCTCGTGCTCGGGGAGAGCGGCACCGGCAAGGAGCTGCTCGCGCGCTTCATCCACGAGCGCAGCGCGCGATCGCGGG
GGCCGTTCGTCGCGGTCAACTGCGCGGCCATCCCGGAGACCATCCTCGAGGCCGAGCTCTTCGGCCACGAGCGCGGCGCG
TTCACCGGCGCCCTCGCGAAGCGCGACGGCCGCTTCGCCAAGGCGGCCGGCGGCACGCTGTTCCTCGACGAGATCGGCGA
GCTCTCGCCCGCCGTTCAGGTGAAGCTCCTCCGCGTGCTGCAGGAGGGCGAGTACGAGCCCGTCGGCGGCGACACGGTGC
GCGCCGACGTGCGCCTGGTCGCGGCCACCAACAAGGACCTGCGCGCCGAGGTCGCCGCCGGCCGCTTCCGCGAGGACCTG
TTCTACCGGCTCAACGTGATCGCGATCACGGCGCCCCCGCTCCGGACCCGCCGCGAGGACATCCCGCTCCTCGTCGACCA
CTTCCTCGGCGTCTACTGCACGAAGAACAACCGCCCCCGCCTGGAGGCGCCGCGCGACGTGCTCGCGCGCCTGACCGACT
ACACGTGGCCGGGCAACGTCCGCGAGCTCGAGAACGTGATCGAGCGCGCCGTGGTCCTCTGCCGCGGCGACCAGCTCTCC
GTCGACGACCTGCCCGACTTCATCCGCGAGGCCGCCCCCGCCGAGCCGAGCTCGCTCACCTTCTCGGTCGGCACGCCCCT
CGACGAGGTCGAGCGCAGGCTCATCCGCGAGACGCTCCGCCACGCCCGCGGGGACAAATCCGTGGCCGCGCAGTTGCTCG
GCATCTCCACGCGCACCATCTACCGAAAGCTCGGCGAGCTGGAGTGA

Protein sequence : 
MADDLAQVPPSAPPAGPAAPPPGAPTVLVVDDEPSNVASIEKIFQRDGMRVITADSAKAALEIVRSRRVEVVLTDLMMPG
VSGLELLRALKQLAPDTEVVMMTAYGTVETAVQAMREGAYDFVEKPLKRMTIIKSVRKAAERQSLVAENRSLRQEIKLLT
KREIVGSSPTLRRVLDIATQAAPSSATVLVLGESGTGKELLARFIHERSARSRGPFVAVNCAAIPETILEAELFGHERGA
FTGALAKRDGRFAKAAGGTLFLDEIGELSPAVQVKLLRVLQEGEYEPVGGDTVRADVRLVAATNKDLRAEVAAGRFREDL
FYRLNVIAITAPPLRTRREDIPLLVDHFLGVYCTKNNRPRLEAPRDVLARLTDYTWPGNVRELENVIERAVVLCRGDQLS
VDDLPDFIREAAPAEPSSLTFSVGTPLDEVERRLIRETLRHARGDKSVAAQLLGISTRTIYRKLGELE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
norR ABD94719.1 putative nitric oxide reductase transcriptional regulator Not tested ExoU island B Protein 3e-54 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sce9222 YP_001619875.1 sigma-54 dependent DNA-binding response regulator BAC0467 Protein 1e-85 47
sce9222 YP_001619875.1 sigma-54 dependent DNA-binding response regulator BAC0089 Protein 4e-81 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sce9222 YP_001619875.1 sigma-54 dependent DNA-binding response regulator VFG1214 Protein 9e-75 42
sce9222 YP_001619875.1 sigma-54 dependent DNA-binding response regulator VFG0116 Protein 1e-65 41