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Name : clpA (sce4989) Accession : YP_001615632.1 Strain : Sorangium cellulosum So ce 56 Genome accession: NC_010162 Putative virulence/resistance : Virulence Product : endopeptidase Clp Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : 3.4.21.92 Position : 7009076 - 7011781 bp Length : 2706 bp Strand : - Note : Family membership DNA sequence : ATGCCGCGCATGCAGCTCGTCGACACCAAAGCCATCGTCAAGCGACTCACCAAGAACTGCACCTCTGCCCTCGAGGCGGC GATTGGCCAGTGTGTCAACGCGCGCCACTACGAGGTCACGCTCGAGCACCTGCTCCTCGCGCTGCTCGACGACGCGAACT CCGACATCGCGTTTCTCGTATCCCACTATGATCTCGACCCGTCGCACCTCCGCGCCGCGCTCCAGCGCAGCCTGGAAGAG CTGAGGAAGGGCAACGCCGGGAGGCCCGTGCTCTCGCCGACGATGCTCGAGTGGATGCAGGACGCCTATCTCGTCGGATC CATGGAGTACGGCTACCAGCGGGTCCGGAGCGGCGTGCTCTTCCAGCGCCTCGTCCAGCAGCCGACCCGGTACTCGGTGA GCAGCATCGGCGCGTATCTCGAGGGCATCTCGAAAGACGATCTCAAGAACAACCTCCCCAAGATCGTCTCCGGCTCCAAG GAGGAGGCGGAGGCCGCAGCCGCTGCGGCGGGCGCAGGAGCGCCCGGGGCCGGGAAGCTGCCGGCCGGGATGGCGAGCGC CGGGCCCGATTCGGCGCTGGCGAAGTTCTGCGTCGACTACACGGGGAAGGCGCGCGCGGGGCAGATCGATCCGATCTTCG GCCGCGAGCGGGAGATCCGGCAGGTCATCGATATCCTCGCGCGGCGGCGCAAGAACAACCCGATCATCGTCGGCGACGCG GGCGTCGGGAAGACGGCGCTCGTCGAGGGGCTCGCGCTGCTCATCGTCGAGAGCACGCCGGAGAACCCGAAGGTGCCGCC GCTCCTGCAGGGCGTCGACATCCTCGGGCTCGACATGGGGCTGCTCCAGGCAGGGGCCGGCGTGAAGGGCGAGTTCGAGA ACCGGATGAAGCAGGTGATCGCCGAGGTGAAGGGGTCGTCGAAGCCGATCATCCTCTTCATCGACGAGGCGCACACGCTC ATCGGCGCGGGCGGCCAGCAAGGCGGCGGCGATGCGGCCAACCTGCTCAAGCCGGCGCTCGCCCGCGGCGAGCTCCGGAC GATCGCAGCCACGACGTGGAGCGAGTACAAGAAATACTTCGAGAAGGACGCGGCCCTGGAGCGGCGCTTCCAGCCGGTGA AGGTCGACGAGCCGAGCGAGCCGGCGGCCGTCGTCATGCTCCGGGGGCTCCGGCCGAAGTTCGAGGTGGCCCACAACGTC ATCATCCAGGATGAGGCGGTGACCGCGGCCGTGCGGCTGTCGGCGCGCTACCTGACCGGCAGGCAGCTGCCGGACAAGGC GGTCGACCTGCTCGACACCTGCGCGGCCCGCGTGAAGGTCGCGCTGCAGCAGCGCCCCTCCGCGGTCGAGGACGCCGAGA TCCTCATCGTGAACACCGAGACCGAGCTCAAGGCACTCGAGCGGGATCGCGACAGGGGCGTGCACATCGATGAAGAGCGG GTCAGCGCGCTGAAGGACAGGCTCGCGAAGGCGAAGACCGAGCTCGAGACGGTGCGCGCCGCGTACGCGAAGGAGACGGC GGGCACGCAGCGGGTCATCGACGCCCGCAAGAAGATGGACGAGGCCAAGACGAGCGAGGAGCGCGACGCCGCGCGCCGTG AGGTGGTCAAGGCCCTCGACGAGCTCAAGCAGAGCCAGGGCGAGGTGCCGCTGGTCCGGCCGGACGTCGACGAGGCCATG GTCGCGAGCGTGGTCGCGGCGTGGACGGGCATCCCCGTCGGCAAGATGGTCCAGGACGACGTGAAGGCGCTCCTCGAGAT GGAGGACCGGCTGACCCGGCGGATCAAGGGGCAGACGCACGGTATCGTGACGATCTCGAAGGAGCTCCGGAGCGCGCGCG CGGGCCTGAAGCCGCTGAGCACGCCGCAGGGCGTGTTCCTGCTCGTGGGGCCCAGCGGCGTCGGCAAGACGGAGACCGCG CTCGGGATCGCCGACCTCATGTTCGGCGGAGAGCGGATGATGACGGTCATCAACATGTCCGAGTTCCAGGAGAAGCACAC CGTCTCCCGGCTCATCGGCTCGCCCCCCGGCTACGTCGGCTACGGCGAGGGCGGCATGCTCACCGAGGCCGTGCGCCAGC GGCCCTACACGGTGGTGCTCCTCGACGAGGTCGAGAAGGCCGACCCCGACGTGATGAACCTGTTCTACCAGGTGTTCGAC AAGGGCATGCTGAGCGACGGCGAGGGGCGGCTCGTCGACTTCAAGAACACGGTCATCATCCTGACGAGCAACCTCGCGAC CGACAAGATCACGAACATGACGGTCGCGGCGCGGGAGGAAGACCCGTCGCGCCGCCTCGACGCGGACGGCGAGTTCATCA AGGAGATCGTCGAGTCGATCAAGCCGACGCTCTCCGCGCACTTCAAGCCGGCGCTGCTCGCGCGCATGACGACGGTGCCG TACCTGCCGATCTCGCCCGACGCGCTCGGCGAGATCACGCGGCTCAAGCTCGACGCGCTCGTCGACCGCCTGCGCAAGAG CCAGCGGATCGAGGCGTCGTACTCGGACGCGCTCGTCGAGACGATCGCGGCGCGCTGCACCGAGGTCGACACGGGGGCGC GCAACATCGACCATATCCTCCGGGCGTCGCTCCTGCCGCTGCTCTCGGTCGCCGTCCTCGAGAAGATGGCGGAGGGGCCG CTCCCGAAGCGGCTCCAGATCGGGGTCGACGCCGAGAAGAACTTCACGATCTCGTTCTCGGACTGA Protein sequence : MPRMQLVDTKAIVKRLTKNCTSALEAAIGQCVNARHYEVTLEHLLLALLDDANSDIAFLVSHYDLDPSHLRAALQRSLEE LRKGNAGRPVLSPTMLEWMQDAYLVGSMEYGYQRVRSGVLFQRLVQQPTRYSVSSIGAYLEGISKDDLKNNLPKIVSGSK EEAEAAAAAAGAGAPGAGKLPAGMASAGPDSALAKFCVDYTGKARAGQIDPIFGREREIRQVIDILARRRKNNPIIVGDA GVGKTALVEGLALLIVESTPENPKVPPLLQGVDILGLDMGLLQAGAGVKGEFENRMKQVIAEVKGSSKPIILFIDEAHTL IGAGGQQGGGDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALERRFQPVKVDEPSEPAAVVMLRGLRPKFEVAHNV IIQDEAVTAAVRLSARYLTGRQLPDKAVDLLDTCAARVKVALQQRPSAVEDAEILIVNTETELKALERDRDRGVHIDEER VSALKDRLAKAKTELETVRAAYAKETAGTQRVIDARKKMDEAKTSEERDAARREVVKALDELKQSQGEVPLVRPDVDEAM VASVVAAWTGIPVGKMVQDDVKALLEMEDRLTRRIKGQTHGIVTISKELRSARAGLKPLSTPQGVFLLVGPSGVGKTETA LGIADLMFGGERMMTVINMSEFQEKHTVSRLIGSPPGYVGYGEGGMLTEAVRQRPYTVVLLDEVEKADPDVMNLFYQVFD KGMLSDGEGRLVDFKNTVIILTSNLATDKITNMTVAAREEDPSRRLDADGEFIKEIVESIKPTLSAHFKPALLARMTTVP YLPISPDALGEITRLKLDALVDRLRKSQRIEASYSDALVETIAARCTEVDTGARNIDHILRASLLPLLSVAVLEKMAEGP LPKRLQIGVDAEKNFTISFSD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 4e-142 | 47 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 3e-146 | 43 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 2e-146 | 43 |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 9e-110 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpA | YP_001615632.1 | endopeptidase Clp | VFG2076 | Protein | 2e-157 | 46 |
| clpA | YP_001615632.1 | endopeptidase Clp | VFG2084 | Protein | 4e-151 | 44 |
| clpA | YP_001615632.1 | endopeptidase Clp | VFG0079 | Protein | 4e-112 | 42 |
