Gene Information

Name : sce1691 (sce1691)
Accession : YP_001612329.1
Strain : Sorangium cellulosum So ce 56
Genome accession: NC_010162
Putative virulence/resistance : Virulence
Product : sigma-54 dependent DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2311239 - 2312621 bp
Length : 1383 bp
Strand : -
Note : Family membership

DNA sequence : 
ATGCCGCGCGGACATGTGCTGGTGCTCGATGACGAGCGGGCGATCTTGACGACCCTCCAGAAGGCGCTGTCGCTCGAGGG
CTACACGGTCGACGTCGCCGGCGGCGTCGGGGTGGCCGAAGAAAAGCTCGCGAAGCGGAGCTACGACATCGCGCTCTTCG
ACGTCTCGCTGCCCGACGGTGACGGCGTGGAGCTGCTCCAGCGGATACGCGTTTCCGGCTCGGAGCTGCCCGTCGTGATG
ATGAGCGGCCACGCGACGGTCGACGCCGCCGTCCGCGCGACGCGGCTCGGGGCGATCGACTTCCTGGAGAAGCCGCTCTC
GACCGATCGGCTGCTGCTCGTGCTCGAGAACACCTTGCGCCTTGTCCGCGCCGAGGCCGAGGCGAAGGCGCTGCGGACGC
AGACCGGCCAGGTCGGCGAGCTCATCGGAGAGAGCCGGGCGATGCTCGACCTGCGCGAGCAGATCGCGCGCGCGGCGAAG
GCGACCGCGACGGTCTTCGTGACGGGCGAGCGCGGCACCGGCAAGGAGCTCGTCGCGCGCGCGATCCACGGCGCGTCGAA
GCGGGCGCGCGGGCCGCTCGAGAAGATGAACTGCGCCGCGGTCCCGAGCGAGCTCATCGAGAGCGAGATGTTCGGGCACG
AGGCCGGCGCGTTCACGGGCGCCACGAAGCAGCGGCGAGGCAAGTTCGAGCGCGCGAGCGGCGGGACGCTGTTCCTCGAC
GAGGTCGGGGACATGCCGCTCGCGATGCAGGCGAAGCTGCTCAGGGTGCTCCAGGAGCGGGAGATCGAGCGCGTGGGCGG
GCACGAGACGATCAAGGTCGACGTGCGCGTGGTGGCCGCGACGAACCGCGACATCGAGGCGGCGTGCCGGGAGGGGCAGT
TCCGGCCGGATCTCTACGATCGGCTGAACGTGCTGCCGCTGTCGCTGCCGCCGCTGCGCGCGCGGCGCGAGGACGTGCCG
CAGCTCGCGCGGCATTTCCTCGCGCTCGCGACGCAGGCGAACGATAGGCCCGGGATGGCGTTCACGGACGGCGGGATGGG
CGTGCTGGTCGCCTACAGCTTCCCGGGGAACGTGCGGGAGCTGCGCAACATCATCGAGCGGCTGGTGATCCTGACGCCCG
ACGAGACGATCGACGAGGGCGACGTGAAGGTCTGCCTCGGAGGGCAGCAGGCCGCGATGAAGGGCGGGCTCTTCCGGCCG
GGGGTGCCGTTCCGGGTGCTCGCGGAAGAGGCGGAGCGGGCGATCCTGGAGGAGGCGCTCGGCCATCACGGAGGGCAGAT
GGCCGCGACGGCCCGGGGGCTCGGGCTCGAGCGGAGCCACCTGTACAAGAAGTTCAAGGCGCTCGGGCTGCGGGGGGACA
AGGGCGAGGCGGAGGACGAGTAG

Protein sequence : 
MPRGHVLVLDDERAILTTLQKALSLEGYTVDVAGGVGVAEEKLAKRSYDIALFDVSLPDGDGVELLQRIRVSGSELPVVM
MSGHATVDAAVRATRLGAIDFLEKPLSTDRLLLVLENTLRLVRAEAEAKALRTQTGQVGELIGESRAMLDLREQIARAAK
ATATVFVTGERGTGKELVARAIHGASKRARGPLEKMNCAAVPSELIESEMFGHEAGAFTGATKQRRGKFERASGGTLFLD
EVGDMPLAMQAKLLRVLQEREIERVGGHETIKVDVRVVAATNRDIEAACREGQFRPDLYDRLNVLPLSLPPLRARREDVP
QLARHFLALATQANDRPGMAFTDGGMGVLVAYSFPGNVRELRNIIERLVILTPDETIDEGDVKVCLGGQQAAMKGGLFRP
GVPFRVLAEEAERAILEEALGHHGGQMAATARGLGLERSHLYKKFKALGLRGDKGEAEDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-55 43
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-55 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sce1691 YP_001612329.1 sigma-54 dependent DNA-binding response regulator BAC0467 Protein 5e-66 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sce1691 YP_001612329.1 sigma-54 dependent DNA-binding response regulator VFG1214 Protein 1e-60 44
sce1691 YP_001612329.1 sigma-54 dependent DNA-binding response regulator VFG1249 Protein 2e-56 42
sce1691 YP_001612329.1 sigma-54 dependent DNA-binding response regulator VFG0116 Protein 4e-60 41