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Name : lysS (sce1634) Accession : YP_001612272.1 Strain : Sorangium cellulosum So ce 56 Genome accession: NC_010162 Putative virulence/resistance : Virulence Product : lysine--tRNA ligase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 2243665 - 2245386 bp Length : 1722 bp Strand : + Note : Family membership DNA sequence : GTGAGCCAGCAAAAAGACAGACCGAACGACAAGAAGACCGAGCGGCTCGTGAAGGAGGCCGCCGAGGCCGCGCGCGCCGA GGAGACGCTGATCGCCACGCGCAAGGCGAAGGCGGCCCGCCTCCGCGCGCGCGGCGACAACCCGTTCGCCAACGACGTCA CGGAGGGCGAGCCGCTCGTCGAGCTCGCGGCCGTCCGCGCCCGCTTCGACGGGGCGCGGGCTGCGGCCGAGCCGAGGCCC GAGGGCGCGGCGCCCGAGCGATCCGCCTCCGCCGCGGCGGATCGCTACGATCCGGCGCGCGTCGAGCCGGTCCCGTTCCG CGTCGCGGGCCGGGTCCTCTTCGTGCGCTCGTTCGGCGGCGTCACCTTCGTCCGGCTGCGCGACCGCACCGGCGAGCTCC AGCTCTACTGCGAGCAGGGGAGCCTCGCCGATTTCGAGCGGCTGGAGGACATCGATCTCGGCGACTTCGTCGAGGCCCAC GGCGTCGCGATGGCGACGCAGAAGGGCGAGCTCTCGATCCGCGCGGGGCGCCTCCGGCTGCTCACGAAGGCCTACCGCCC GCTGCCGACCAAGACGAGCTTCAAGGACGTCGAGTCGCGCTACCGTATGCGGTACGTCGATCTCGTGGCCAACCCGCACG TCGCGGGGGTCTTCCGCGCCCGCACCGCGATCGTCGCCGCGCTGCGCGGGTTCCTCGACGCGCGCGGCTTCCTCGAGGTC GAGACCCCGACGATGCACACGCTCGTCGGCGGCGCGGCCGCGAAGCCGTTCAAGACCCACCACAACGCGCTCGACCTCGA GCTCTTCATGCGCATCGCGCCGGAGCTCTTCCTGAAGCGGCTCGTGGTCGGCGGCTTCGAGCGCGTCTACGAGATCGCGC GCTGCTACCGGAACGAGGGGCTGTCGACGCGGCACAACCCCGAGTTCACGATGCTCGAGTACTACCAGGCGTACGCGACG TACGAGACGCTGATGGACGCCACCGAGGCGATGCTCCGCCACGTCGACGCCCGCCTCGCCGAGCGGCTCCCGGCCGAGCA CGCGGCCTGGGCCGCGCAGCGCACGTACTCGCTCGAGCGCTTCGAGCGCGTCCCCATGGCCGAGGGGATCGCCCGCGCCC TGTCGAAGTCGGGCCTGCCGGCCGACGTCCCGCAGCGCGTCGCCGCGGACGACGCCCCGATCAAGGAGTGGGCGAAGGCG GCGAAGGCGAGCGGGCGCGAGATCGACTGGACGAACTTCCGCGCGGGCGCGAAGAAGTGCGAGTCGCCGGGTGAGCTCGT CTTCTGCGCCTACGAGTACGTGGTCGAGCCGTTCCTCACGAGGGACTACCGCACGGAGGCGGGCGACAAGAGCGTCCCTG TCTTCATCATCGACTATCCCTTCGAGGTCTCCCCGCTCGCGCGCAAGAAGGACAGCGATCCTTCGCTGGTCGACCGCTTC GAGCTCTTCATCGACGGCCGCGAGCTCTGCAACGCCTTCAGCGAGCTCAACGACCCCGAGGACCAGGACGCGCGCTTCCG CGCGCAGGTCGAGAAGAAGTCGCGGGGCGAGGAGGAGACGATGGATTACGACGCCGACTACGTCCGCGCCCTGGAGCACG GCCTCCCGCCGACGGCGGGCTTCGGCATGGGGGTCGATCGCCTGACGATGCTCCTCACCGGCGCGACCTCCATCCGCGAC GTCATCCTGTTCCCGCTCCTCCGTCCCGAGACCGACGCGTGA Protein sequence : MSQQKDRPNDKKTERLVKEAAEAARAEETLIATRKAKAARLRARGDNPFANDVTEGEPLVELAAVRARFDGARAAAEPRP EGAAPERSASAAADRYDPARVEPVPFRVAGRVLFVRSFGGVTFVRLRDRTGELQLYCEQGSLADFERLEDIDLGDFVEAH GVAMATQKGELSIRAGRLRLLTKAYRPLPTKTSFKDVESRYRMRYVDLVANPHVAGVFRARTAIVAALRGFLDARGFLEV ETPTMHTLVGGAAAKPFKTHHNALDLELFMRIAPELFLKRLVVGGFERVYEIARCYRNEGLSTRHNPEFTMLEYYQAYAT YETLMDATEAMLRHVDARLAERLPAEHAAWAAQRTYSLERFERVPMAEGIARALSKSGLPADVPQRVAADDAPIKEWAKA AKASGREIDWTNFRAGAKKCESPGELVFCAYEYVVEPFLTRDYRTEAGDKSVPVFIIDYPFEVSPLARKKDSDPSLVDRF ELFIDGRELCNAFSELNDPEDQDARFRAQVEKKSRGEEETMDYDADYVRALEHGLPPTAGFGMGVDRLTMLLTGATSIRD VILFPLLRPETDA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-82 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001612272.1 | lysine--tRNA ligase | VFG1668 | Protein | 2e-82 | 43 |
