Gene Information

Name : sitC (Btr_0092)
Accession : YP_001608581.1
Strain : Bartonella tribocorum CIP 105476
Genome accession: NC_010161
Putative virulence/resistance : Virulence
Product : Iron transport protein, inner membrane component
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 119835 - 120701 bp
Length : 867 bp
Strand : -
Note : inner-membrane protein (permease component) of an iron transport system,InterPro: ABC transporter family 3; hypothetical protein

DNA sequence :
ATGATTTCTTGGTTGCTTGAACCACTGAGCTATCAATATATGGTGAATGCAATGTGGGTTTCTGGATTAGTTGGGTGTGT
TTGTGCCTTTCTTTCAGCTTTTTTGATGTTAAAAGGTTGGTCATTGATTGGTGATGCGCTATCCCATTCAATTGTTCCTG
GTGTCGCAGGAGCTTATCTTTTAGGGTTACCTTTTTCACTTGGCGCTTTTTTTTCTGGTGGTCTTGCTGCAGCAGCAATG
CTGTTTTTTAATCAGCGGACAAAACTGAAAGAAGATACCATTATTGGTCTCATTTTTTCTTCCTTTTTTGCTTTTGGATT
ATTTCTCAAATCATTAAAACCAATGGCTGTTAATATTGATACAATTGTTTTAGGAAATATTTTAGCCGTTAGTTCATCAG
ATATTATCCAATTGGCTTTTATTGGTTTTTTTTCTTTATTTATATTGCTTTTGAAATGGAAAGATCTCCTTGTTTCTTTA
TTTGATGAAACACACGCTCGTGCCATTGGATTGAATGTAAAATTTTTAAAAATTCTCTTCTTCACACTGCTTGCTGCTTG
TACTGTTGCGGCAATGCAAACGGTTGGAGCATTTTTAGTTATTTGTTTGGTTGTGACGCCTGGGGCAACTGCTTATCTTT
TAAGTGACCGTTTTGTAAATATCTTGGTTATTGCAGTTATAATTGGAACACTCACAAGCGTATTGGGTGTTTATATGAGT
TATTTTCTGAATGCACAAACGGGCGGGGTTGTCGTACTTTTTCAAGCATTCTTATTTATGTTAGCTTTTATTTTTGCTCC
TAAACACGGATATATTGCCGCACGTTTACGGATAAATGCAGCAAAAAAAGGTGTGGTGTTATCATGA

Protein sequence :
MISWLLEPLSYQYMVNAMWVSGLVGCVCAFLSAFLMLKGWSLIGDALSHSIVPGVAGAYLLGLPFSLGAFFSGGLAAAAM
LFFNQRTKLKEDTIIGLIFSSFFAFGLFLKSLKPMAVNIDTIVLGNILAVSSSDIIQLAFIGFFSLFILLLKWKDLLVSL
FDETHARAIGLNVKFLKILFFTLLAACTVAAMQTVGAFLVICLVVTPGATAYLLSDRFVNILVIAVIIGTLTSVLGVYMS
YFLNAQTGGVVVLFQAFLFMLAFIFAPKHGYIAARLRINAAKKGVVLS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-69 71
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-69 71
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-69 71
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-69 71
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-69 71
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-30 42
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-30 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-30 42
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-30 42
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-30 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC YP_001608581.1 Iron transport protein, inner membrane component BAC0351 Protein 2e-69 71
sitC YP_001608581.1 Iron transport protein, inner membrane component BAC0441 Protein 9e-60 60
sitC YP_001608581.1 Iron transport protein, inner membrane component BAC0352 Protein 1e-30 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC YP_001608581.1 Iron transport protein, inner membrane component VFG0527 Protein 1e-69 71
sitC YP_001608581.1 Iron transport protein, inner membrane component VFG0528 Protein 9e-31 42