Gene Information

Name : yscK (YpAngola_B0062)
Accession : YP_001604493.1
Strain :
Genome accession: NC_010157
Putative virulence/resistance : Virulence
Product : type III secretion apparatus protein YscK
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 40863 - 41489 bp
Length : 627 bp
Strand : +
Note : identified by similarity to SP:Q01252; match to protein family HMM PF06578

DNA sequence : 
ATGGAAAATTATATTACCTCTTTTCAATTGCGCTTCTGCCCCGCGGCTTATTTGCACTTGGAACAGTTACCATCATTATG
GCGTTCAATATTGCCCTACTTACCTCAGTGGCGCGATAGTGCTCATCTCAATGCTGCTTTATTGGATGAATTTTCTCTTG
ATACCGACTATGAAGAGCCCCATGGGCTGGGGGCGCTGCCTTTGCAGCCTCAATCACAGCTCGAACTGTTACTTTGTCGC
CTTGGATTAGTTCTGCATGGGGAGGCGATTCGCCGTTGTGTACTGGCCTCCCCATTACAACAATTATTGACATTGGTTAA
TCAAGAAACATTAAGGCAAATTATTGTACAGCATGAGCTGCTAATCGGGCCTTGGCCCACTCACTGGCAGCGCCCGCTGC
CGACAGAAATAGAGAGCCGTACCATGATCCAGTCGGGGCTGGCTTTTTGGTTAGCAGCAATGGAACCCCAACCTCAGGCA
TGGTGTAAACGGCTCAGTTTACGCCTCCCATTAGCTACGCCGTCAGAACCTTGGTTAGTGGCCGAGTCACAACGCCCACT
GGCCCAAACTTTATGTCACAAACTTGTCAAACAGGTTACGCCTACATGCAGCCATTTGTTCAAATAA

Protein sequence : 
MENYITSFQLRFCPAAYLHLEQLPSLWRSILPYLPQWRDSAHLNAALLDEFSLDTDYEEPHGLGALPLQPQSQLELLLCR
LGLVLHGEAIRRCVLASPLQQLLTLVNQETLRQIIVQHELLIGPWPTHWQRPLPTEIESRTMIQSGLAFWLAAMEPQPQA
WCKRLSLRLPLATPSEPWLVAESQRPLAQTLCHKLVKQVTPTCSHLFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscK AAO18026.1 LscK Virulence TTSS locus Protein 6e-40 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscK YP_001604493.1 type III secretion apparatus protein YscK VFG0410 Protein 3e-82 100
yscK YP_001604493.1 type III secretion apparatus protein YscK VFG0219 Protein 2e-23 41