Gene Information

Name : yscJ (YpAngola_B0061)
Accession : YP_001604492.1
Strain :
Genome accession: NC_010157
Putative virulence/resistance : Virulence
Product : type III secretion apparatus lipoprotein YscJ
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4669
EC number : -
Position : 40126 - 40860 bp
Length : 735 bp
Strand : +
Note : identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544

DNA sequence : 
GTGAAAGTTAAGACTTCACTGTCAACATTGATATTAATCTTGTTTTTAACTGGTTGCAAAGTTGATCTTTATACCGGAAT
TAGTCAGAAGGAAGGGAACGAAATGCTTGCGCTGTTGCGCCAAGAAGGCCTTTCCGCAGACAAAGAGCCAGACAAAGATG
GGAAGATTAAGCTCTTGGTTGAGGAGTCAGATGTCGCTCAGGCTATTGATATTCTCAAACGGAAGGGCTATCCACACGAG
AGTTTCTCCACGTTACAGGATGTGTTCCCCAAAGATGGGTTGATATCTTCACCGATAGAAGAGTTGGCGAGGCTTAATTA
TGCCAAGGCGCAAGAGATCTCCCGCACTTTATCTGAAATTGACGGGGTATTAGTGGCTCGAGTGCATGTCGTATTGCCTG
AAGAGCAAAATAACAAAGGTAAGAAGGGTGTAGCAGCATCCGCTTCGGTTTTTATCAAGCATGCAGCAGATATTCAGTTT
GATACCTACATACCTCAGATTAAACAATTAGTGAATAATAGTATTGAGGGGCTGGCCTATGATCGCATCAGTGTCATTTT
GGTGCCATCGGTAGATGTTCGTCAAAGCTCTCATTTACCTCGTAACACGAGCATACTGTCAATTCAAGTGAGTGAAGAGT
CAAAAGGGCATCTTATTGGCTTGTTGTCGTTGCTTATTTTGCTTTTGCCAGTGACCAATCTTGCTCAATATTTTTGGTTA
CAACGCAAGAAGTGA

Protein sequence : 
MKVKTSLSTLILILFLTGCKVDLYTGISQKEGNEMLALLRQEGLSADKEPDKDGKIKLLVEESDVAQAIDILKRKGYPHE
SFSTLQDVFPKDGLISSPIEELARLNYAKAQEISRTLSEIDGVLVARVHVVLPEEQNNKGKKGVAASASVFIKHAADIQF
DTYIPQIKQLVNNSIEGLAYDRISVILVPSVDVRQSSHLPRNTSILSIQVSEESKGHLIGLLSLLILLLPVTNLAQYFWL
QRKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscJ AAO18027.1 LscJ Virulence TTSS locus Protein 6e-76 76
hrcJ AAB05080.1 HrcJ Virulence Hrp PAI Protein 2e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscJ YP_001604492.1 type III secretion apparatus lipoprotein YscJ VFG0409 Protein 9e-97 100
yscJ YP_001604492.1 type III secretion apparatus lipoprotein YscJ VFG0218 Protein 5e-73 74
yscJ YP_001604492.1 type III secretion apparatus lipoprotein YscJ VFG0051 Protein 1e-31 41